Protein Info for AMB_RS21490 in Magnetospirillum magneticum AMB-1

Annotation: DUF805 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details PF05656: DUF805" amino acids 14 to 113 (100 residues), 109 bits, see alignment E=9.1e-36

Best Hits

Swiss-Prot: 42% identical to YHAH_ECOLI: Inner membrane protein YhaH (yhaH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to mag:amb4251)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZC0 at UniProt or InterPro

Protein Sequence (121 amino acids)

>AMB_RS21490 DUF805 domain-containing protein (Magnetospirillum magneticum AMB-1)
MDFITAVKTNLSKYATFQGRAIRSEYWFFNLFYFIVSMIFSVIAGAADGALSVLPVVLLI
GLFVPSLAVSVRRLHDVDKSGWWMLIFLVPIIGFILMLVWFCKRGTEGANRFGDDPLAGS
A