Protein Info for AMB_RS21460 in Magnetospirillum magneticum AMB-1

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 808 PF00271: Helicase_C" amino acids 175 to 262 (88 residues), 33.2 bits, see alignment E=2.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4245)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZC6 at UniProt or InterPro

Protein Sequence (808 amino acids)

>AMB_RS21460 ATP-dependent helicase (Magnetospirillum magneticum AMB-1)
MTRILAVLGPTNTGKTHFAMERMLAHASGMIGFPLRLLARENYDRMVKIKGAANVALITG
EEKIIPSHARWLVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLHARGESETLF
LGAETIRPLIRRLVPGVEFMSRPRFSQLTHVGAKKLGRLPPRSVLVAFSAAEVYAMAEFV
RRSRGGAAVVLGALSPRTRNAQVGMYQAGEVDYIVATDAIGMGLNMDVDHVAFAALRKFD
GRAPRPLEPTEIAQIAGRAGRHMNDGTFGTTMDAGTIASEIVEQVENHRFDPLKTLYWRN
ADLRFASVAALLSSLDRPPDKPGLLRARDADDQLALAALAQDEDIIRLASHPERVKLLWE
VCRVPDFRKVMDESHTRLLGRIFRYLAAPSGRLPTDWLAENIRRIDRTDGELDTIVQRIA
NIRTWTYVSHRSDWVPDSAHWQEVTRGVEDRLSDALHQRLTNRFVDKRTAVLVRRLRDGG
AMDSEIGPEGEVRVEGEYVGRLAGFRFQVDQADNSAAGRTMLAAALRALAPEVDRRLTQA
LADPPEAFELGPDGLFWRGEPLACLSAGADALHPKVEAPDGDLLPPKGRERLRQRLADVV
RSWLANRLPSLVRLGQAPLTGGARGLAHQLAEGLGSMPCDEALVRTLTKDDSLALARLDI
RVGRHGLYIPALLKPKAQGLRALLWSIHAGTSAPDIPGPRPAVPLADGVPPAFYEAVGYG
VLGKVAVRRDVLERFAALARAAAHDGVFQPSHDMHSALGLGPAATESVLEALGYVRAGDG
FRTGRKPRRKVRPEQPSDSPFAVLKGRR