Protein Info for AMB_RS21275 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 216 to 235 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 7 to 100 (94 residues), 31.2 bits, see alignment E=1.9e-11 PF00535: Glycos_transf_2" amino acids 10 to 174 (165 residues), 92.4 bits, see alignment E=3.2e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4205)

Predicted SEED Role

"Dolichol-phosphate mannosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZG6 at UniProt or InterPro

Protein Sequence (247 amino acids)

>AMB_RS21275 glycosyltransferase family 2 protein (Magnetospirillum magneticum AMB-1)
MTSLVVPELSVVVPVKNEAENILPLLDEIHMALQGKVEFEVVYVDDGSDDATPAVLEQAR
AIHPRLKVVRHRTGCGQSQAVATGVKHAGGKLIATLDGDGQNDPADLPAMLEHWRSRPET
VRAGLMITGWRANRRDDGIRRLSSKLANAIRSKLLRDQTPDSGSGIKLLPRELFLDLPRF
DHMHRFMAALVIRAGGSVEVVKVNHRPRERGTSKYGVWNRLWVGIVDLFGVMWLMRRARN
PVVECRE