Protein Info for AMB_RS21240 in Magnetospirillum magneticum AMB-1

Annotation: heme exporter protein CcmD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 69 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details TIGR03141: heme exporter protein CcmD" amino acids 12 to 57 (46 residues), 56 bits, see alignment E=1.6e-19 PF04995: CcmD" amino acids 15 to 57 (43 residues), 42.1 bits, see alignment E=3.4e-15

Best Hits

KEGG orthology group: K02196, heme exporter protein D (inferred from 100% identity to mag:amb4198)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZH3 at UniProt or InterPro

Protein Sequence (69 amino acids)

>AMB_RS21240 heme exporter protein CcmD (Magnetospirillum magneticum AMB-1)
MTNVMESFQAMLHMGGYGGYVWPAYGVGIVLLVLVLALSLSSAHRAEAELEVLQQARRAR
RGKDSESPE