Protein Info for AMB_RS21115 in Magnetospirillum magneticum AMB-1

Annotation: membrane-bound metal-dependent hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 69 to 87 (19 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details PF04307: YdjM" amino acids 1 to 139 (139 residues), 116.1 bits, see alignment E=6.1e-38

Best Hits

KEGG orthology group: K07038, inner membrane protein (inferred from 100% identity to mag:amb4172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZJ9 at UniProt or InterPro

Protein Sequence (164 amino acids)

>AMB_RS21115 membrane-bound metal-dependent hydrolase (Magnetospirillum magneticum AMB-1)
MMVVSHVVLGVSAWTLAQRAGLAVPLGPEGAAAAALGALLPDIDHPSSWLGRRLWPISKP
ISMVLGHRGLTHSLLAVMGGLAVLMLVEPGRGLVRLAEPLALGYLSHLAADALTPAGVPL
LWPWKQRFGVGLCSTGGVMEWLVVAAVAAATAFLTGLSPGPVWG