Protein Info for AMB_RS21080 in Magnetospirillum magneticum AMB-1

Annotation: nitrite reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 60 to 134 (75 residues), 46.1 bits, see alignment E=7.5e-16 PF00034: Cytochrom_C" amino acids 63 to 136 (74 residues), 27.2 bits, see alignment E=1.2e-09 PF02239: Cytochrom_D1" amino acids 171 to 563 (393 residues), 516.5 bits, see alignment E=4.3e-159

Best Hits

Swiss-Prot: 70% identical to NIRS_PSEAE: Nitrite reductase (nirS) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K00368, nitrite reductase (NO-forming) [EC: 1.7.2.1] K05601, hydroxylamine reductase [EC: 1.7.99.1] (inferred from 100% identity to mag:amb4165)

MetaCyc: 70% identical to nitrite reductase (NO-forming) monomer (Cupriavidus necator)
Nitrite reductase (NO-forming). [EC: 1.7.2.1]

Predicted SEED Role

"Cytochrome cd1 nitrite reductase (EC:1.7.2.1)" in subsystem Denitrification or Dissimilatory nitrite reductase or Heme biosynthesis orphans (EC 1.7.2.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.7.2.1

Use Curated BLAST to search for 1.7.2.1 or 1.7.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZK6 at UniProt or InterPro

Protein Sequence (568 amino acids)

>AMB_RS21080 nitrite reductase (Magnetospirillum magneticum AMB-1)
MKAATWMMAALAVAWAGTAMAEEKPAHGAGEHYETSGDQLRAAPMSQPGAQPGPQLSAAE
FTRAKQIYFERCAGCHGVLRKGATGKPLTTDITRERGFDALKAFITYGSAAGMPNWGSSG
QLSEAEVDLMAKYLLNEPPQPPEFGMDEIKATWKVQIPADKRPARKMNTLDLSNLFSVTL
RDSGEIALIDGASKNIVSIIKTGYAVHISRISASGRYLYVIGRDAKINLIDLWMEKPETV
AEVKIGMEARSVETSKFKGFEDKYAIAGAYWPPQFVIMDGNTLEPKKIVSTRGMTSDKQE
YHPEPRVASIVASHFKPEFVVNVKETGLILLVDYSDIKNLKVTSIEAERFLHDGGFDASK
RYFLVAANARNKIAVVDTKEDKLVGMVEVGATPHPGRGTNFVHPKFGPVWATGHLGDDSV
ALIGTDPKGHPKQAWTKVASLTGQGGGSLFLKTHPKSKNLWVDTTLNPDADVAASIAVFD
INNLDKPAEVLPIAKWAGISDGAPRVVQPEYNKAGDEVWISVWNAKDKVSAIVVVDDKTR
KLKSVIKDPRLITPTGKFNVTNTLHDVY