Protein Info for AMB_RS21035 in Magnetospirillum magneticum AMB-1

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 795 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 285 to 305 (21 residues), see Phobius details PF00672: HAMP" amino acids 303 to 354 (52 residues), 27.5 bits, see alignment 4.9e-10 PF00015: MCPsignal" amino acids 464 to 618 (155 residues), 110.8 bits, see alignment E=1e-35 TIGR02481: hemerythrin-like metal-binding domain" amino acids 665 to 785 (121 residues), 89.3 bits, see alignment E=1.1e-29 PF01814: Hemerythrin" amino acids 672 to 784 (113 residues), 43.2 bits, see alignment E=8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4156)

Predicted SEED Role

"InterPro IPR000727:IPR003660:IPR004089 COGs COG0840"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZL5 at UniProt or InterPro

Protein Sequence (795 amino acids)

>AMB_RS21035 HAMP domain-containing protein (Magnetospirillum magneticum AMB-1)
MRNPLSRFSLKIQIGSLVALAGLVLSTLLAVDLMEQSIADRANAIAARETIIGDQAGAVD
RALLNARRHEKDFLLRGEAKYIAQHAESIRAARAALDGMTSAMVTDDVRHPQIDAVRKGL
TTYVDAFRVLTERHILVGLTVNDGLTGALRKSVHEIESALKSHDDPPLAVAMLTIRRDEK
DFFARLDPKYLDEMAQNYVDFEKALSVSAVPARDRPAILNLLADYRRDFTAAAEASLAMV
GDGTVLASSYASVQPLIDALDDEALTAMKVAKERAHQADETAGRMMLSVMASGFAIMVVI
GTLIARSIYGPITAMTGVMGELAGDNLSVTVPFTDRGDELGGMAKSVGHFKDQLIRVRQL
EAAQEEQKRRAEADRLAAMRKLADTFEGSVGKVIETVTSAATELEAASGQMAGTATETSS
QATTVASAAQQASTNVQTVASATEELASSIKEIAHQVERSQAVSHHAGDEAHTTTMQVQA
LSANVGKIGEIVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKDLANQTAKA
TSEIAGQIQAVQDSTRVAVHAIESISKVIAEMGEISSAVAAAVEQQTAATGEIARNVEQA
AEGTQEVTRNIVSVEQAAKETGQAAEQIRESSGELSRQAEFLRHEVGQFLIQVRSEKKDM
VLLHWDRDLEAGVTSIDRYHQEKFEHINEFYRQMMSEDGGKAAIALLSEIDRSIQGHFGE
EEALMAKCGYGDGEAHRRSHKAFQERIRALRTGIETNHPEAVSQLFDYVSDWFPDHIRNE
DMALALFLRDRKMAA