Protein Info for AMB_RS19585 in Magnetospirillum magneticum AMB-1

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 PF13181: TPR_8" amino acids 46 to 72 (27 residues), 12.2 bits, see alignment (E = 6.4e-05) amino acids 81 to 111 (31 residues), 12 bits, see alignment (E = 7.2e-05) PF13176: TPR_7" amino acids 46 to 75 (30 residues), 19.6 bits, see alignment (E = 2.5e-07) amino acids 80 to 110 (31 residues), 14.1 bits, see alignment (E = 1.5e-05) PF13374: TPR_10" amino acids 49 to 73 (25 residues), 15.2 bits, see alignment (E = 6.4e-06) amino acids 78 to 107 (30 residues), 18.1 bits, see alignment (E = 7.4e-07) PF01075: Glyco_transf_9" amino acids 365 to 410 (46 residues), 23.3 bits, see alignment 1.3e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3871)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0F0 at UniProt or InterPro

Protein Sequence (452 amino acids)

>AMB_RS19585 tetratricopeptide repeat protein (Magnetospirillum magneticum AMB-1)
MSAHTPAPQAQQAFTAAAQAWRESRMDAAEQGFAAAALLEPGWSSAHANLGAVLRRLGKC
EAAVASYRRALTVGAEDAGTLSNMGNALRDLGLLEESETAHRRAVALAPDNWGYRYNLAL
LLRDRRLHGEARAMMAELAATDPENAEIQWDLALADLYLGDYRTGFAGYEWRIKLARNPV
RDHPGPRWTGDDPTGRTILLLAEQGFGDALQFARYVPLLAARGARVVLECLPEQAELFAS
LRDVAALVAKGAPPPVHDCWAPLASLPHLLGTEFHSIPAEIPYLSAPPRPNLRMVPPPGQ
KLAVGLVWAGKTTPRDRSWPLEQLTPLLGDPRATFYSLQLGPRAGDLKSTGLERLVRDAA
PALQSFADTAHVMEHLDLIITIDTSVAHLAGALGRPVWVLLRYVSDWRWQDEPLTSPWYP
TMRLFRQPDPSDFKTPVAEMAAELASLIDERH