Protein Info for AMB_RS19560 in Magnetospirillum magneticum AMB-1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 684 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 59 (20 residues), see Phobius details amino acids 660 to 679 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3866)

Predicted SEED Role

"FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases" in subsystem Threonine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0F5 at UniProt or InterPro

Protein Sequence (684 amino acids)

>AMB_RS19560 membrane protein (Magnetospirillum magneticum AMB-1)
MSFHALAFAPLFPWPLIAALGGMAVLLVGVGLWRRASGTLLRAVVMAVLLAALANPRLLA
ENRTTLPDVALVVVDETPSQGIGERRAQTREALDELTRRLALLKGLEVRVERVGAEPGAD
RGTRLFEAAERALADVPRRRLAGVTLITDGRVHDVPADLGRSLGAPVHTLLTGAPDERDR
RLVPGASPAFALVGETATLAFRVEDQGGKGDAVVAVRLDGKPHAAISVPLNRDATLDVPI
RHAGANVVELEVEPGPGELSLANNRTALSISGVRNRLKVLLVSGEPHAGERTWRNLLKSD
PAVDLVHFTILRPPEKDDQTPIREMSLISFPVRELFEEKLAEFDLIIFDRYRRRGVLAPA
YYRNLARYVRDGGALLAAVGPEFAEADGIAESALAEVLPALPTGRRLDKEFRPRLTEAGR
RHPVMAGLPGTRPGDAPWGSWMRQMEVGTAKGTTLLSGLDDRPLVVLDRVGEGRVAMVLS
DTLWLWARGWEGGGPHAEMTRRLAHWLMKEPDLEENALTAAVEGGRLMVAARGAPDGVAA
TITAPDGTQAPLRLDPDDEGVARGALDAGQTGLWRVSLPDGRVALAAAGQAAPVELAELT
ATPERLFPVAKATGGIVSWLSRDGLPDPRRVAAGSTTGGRGWMGLAERGDYVVDGIRETA
LAPALALALLCLGGLLMVWRNETR