Protein Info for AMB_RS19515 in Magnetospirillum magneticum AMB-1

Annotation: outer membrane protein assembly factor BamD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 14 to 245 (232 residues), 282.7 bits, see alignment E=1.2e-88 PF13512: TPR_18" amino acids 36 to 162 (127 residues), 64.4 bits, see alignment E=4.7e-21 PF13525: YfiO" amino acids 37 to 231 (195 residues), 181.1 bits, see alignment E=8.1e-57 PF13432: TPR_16" amino acids 43 to 109 (67 residues), 22.4 bits, see alignment E=5.2e-08 amino acids 80 to 126 (47 residues), 22.4 bits, see alignment 5.2e-08 PF13174: TPR_6" amino acids 78 to 108 (31 residues), 22.1 bits, see alignment (E = 6e-08) amino acids 116 to 153 (38 residues), 18 bits, see alignment 1.3e-06 amino acids 210 to 242 (33 residues), 15.8 bits, see alignment 6.3e-06

Best Hits

Swiss-Prot: 53% identical to BAMD_CAUVC: Outer membrane protein assembly factor BamD (bamD) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K05807, putative lipoprotein (inferred from 100% identity to mag:amb3856)

Predicted SEED Role

"Competence lipoprotein comL precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0G5 at UniProt or InterPro

Protein Sequence (304 amino acids)

>AMB_RS19515 outer membrane protein assembly factor BamD (Magnetospirillum magneticum AMB-1)
MRHRSATSRLLPALALSAALAAGLGACSEKKPEYVERPVEELYNEAMDLVDANEYYKAAQ
LFDEVDRQHPYSVWATKAQLMSAYALYERNKYDDAIVALDRFIQLHPGNKSIAYGYYLKG
LCYYEQITDVARDQKLTEQALKIMQEVVDRFPSTPYARDARLKIDLARDHLAGKEMNIGR
YYQHLEHHLAALNRFKVVAEQYQTTTHVPEALYRMVEIYTALGLDQEAARAAAVLGHNFP
GSDWYEDAYAMVEKGNLNPTGRSKKHWTDPLVFWSNDKDKRQEIPKADDPAKTSGGWFNW
AKFW