Protein Info for AMB_RS19495 in Magnetospirillum magneticum AMB-1

Annotation: cell division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 58 to 76 (19 residues), see Phobius details PF08478: POTRA_1" amino acids 101 to 169 (69 residues), 58.1 bits, see alignment E=8.8e-20 PF03799: FtsQ_DivIB_C" amino acids 173 to 288 (116 residues), 58 bits, see alignment E=1.7e-19

Best Hits

KEGG orthology group: K03589, cell division protein FtsQ (inferred from 100% identity to mag:amb3852)

Predicted SEED Role

"Cell division protein FtsQ" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0G9 at UniProt or InterPro

Protein Sequence (315 amino acids)

>AMB_RS19495 cell division protein (Magnetospirillum magneticum AMB-1)
MRLNPSDIVITADDRPGIHRAPRQISAKRQTVEAPAARPKAKRRWPRLRLDMSPLQRLTG
YGLAATILLIGGLALWHSGKPQRLVRETATAFLNSTAEAGFQVADITVSGRRRTPTDQLV
SALGAQYGDPILGLDIAAARARIEALPSVRAAAIERRLPGAIHLSIVERQPVALWQTDSR
FVLVDRDGHNIPGAIEGFEDLPLVVGDGAPARTDELFALLATEPELASRVKAAIRVSNRR
WNIKLDDVEKGLEARLPELDTQVAWHRLAELEKTRALSGKQITMIDLRVPDRLVLKSERE
PVVNTASAAPPARER