Protein Info for AMB_RS19380 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3828)

Predicted SEED Role

"Flagellar hook-associated protein FlgL" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0J3 at UniProt or InterPro

Protein Sequence (712 amino acids)

>AMB_RS19380 hypothetical protein (Magnetospirillum magneticum AMB-1)
MTRIGTLGANNAFVNRILDIQTRIQTEQIQVTSGLKAQSYDGIAAGTNTVINFQNEQAIA
QRFIDNNDVWNTKLEAATTAIASVKKTLTIFRDSLESFRQNNPKNEQNIKGIQNTAFQAL
QSIQADLGTNVNGQYLFSGGRVSDVPIQLPAGSLSEFQSMYDGSINTFSTTRNADTQAVS
LTNVETSAMSFNGANGVITPARADAFKTIYPGSRITVSDSNVSPPNNGDFTIRSKAICDL
TGTPLAEGSTTTNVISYGSGPGTILDTATNQLNFAFAPDGTMNMTAATAGSLANLTVGTK
FTIGPQLNNGASTTGYEGSFEVVSNKNGVVNFRTNYDTAKDEAVASTDLTFGINGGAMAN
PATAGTLNFTTTSSAVTGKTTVTLTAATGATIDFSTVSVGDQLSLGGTAGHNGTFTVTNA
TATSVSFEINPEGARIAQFLPQTGRSDVSMSFKDTNAGATVTRNNTNFGSLTFASTGTLG
ERITSSNANGFLDDGGNPYPANGTIITMKSTSGVNDGVYKVVANNGNYIEIASASLTTET
LSTKTKIDSSSWYKGDTLQLQHRVDIDRTVDVGIYASDPAFEKGIRALALIAQGQFGTAG
GLDSHQERIGQALYLVNDSLESPAAGTPPFGTEKAGDVKSVASLLDGTRKTISLKNEKHN
QFIGFLSKRVADIAQVDKTEIATKMLSDQTALEGSYQVLAQVKNLSLLNYLK