Protein Info for AMB_RS19260 in Magnetospirillum magneticum AMB-1

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 688 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 316 to 338 (23 residues), see Phobius details PF00672: HAMP" amino acids 337 to 388 (52 residues), 32.8 bits, see alignment 7.2e-12 PF00015: MCPsignal" amino acids 494 to 651 (158 residues), 108.7 bits, see alignment E=3e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3804)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0L7 at UniProt or InterPro

Protein Sequence (688 amino acids)

>AMB_RS19260 HAMP domain-containing protein (Magnetospirillum magneticum AMB-1)
MSIKGFVSACLAAVAAVLALTAVVLLASNWGEYRAARDAGQLVDLLGVSTRISEALAPER
GATSVALDGDPAARKTMAEVRATLDEALNATEKLALATPLAEARDVAEGVAKIRTAITDW
RSRSDGVIGSDPQKIAPFRKDFVAGMYDVLKVAGGMTGRLERRLFAIDAQVATPASLAET
AWQLRDHGGRLATMHLSVIQGGKPFTAEQIHQIDLADGRVQQLWDILNSAAGSPDSSAGL
RDGLAKVNSAYMGPFQPLRARVTKAGMADGKYDLDPAEWRRQSAPMLQAIMLMRDAAIGE
ARRVADEKRDNALRNLLLMGGLMLAAAGVLAFVVVGIGRRVVAPLAELTRVIGDFAGGSR
DFSVPHAGRTDEIGAMATAIQVLRDNAREADSRAAREEEAARLRDQHRQRVEAVTTTFVD
SIDSVVGGVATAVNGLRASTETLSQTATTTTEQSTVVASAAEEASTNVQTVAAAAEELSH
SIQEISRRVAETATATDGAVREAEATNATVRGLAEAARRIGDVVNMITDIASQTNLLALN
ATIEAARAGDAGKGFAVVAGEVKNLANQTARATDDIQAQVGAIQAETERAVAAIGGIATT
IATVNDYTMGIASAVEEQGAATQEIARNVQQAAAGTSEVSQSIGKVLDAARQTGVAAQQL
SGLADGLSGESDRLRGNVGGFIAEVRAS