Protein Info for AMB_RS18385 in Magnetospirillum magneticum AMB-1

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 PF00072: Response_reg" amino acids 252 to 364 (113 residues), 97.2 bits, see alignment E=1e-31 PF07228: SpoIIE" amino acids 439 to 624 (186 residues), 111 bits, see alignment E=1.1e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3632)

Predicted SEED Role

"Pole remodelling regulatory diguanylate cyclase" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W139 at UniProt or InterPro

Protein Sequence (625 amino acids)

>AMB_RS18385 transcriptional regulator (Magnetospirillum magneticum AMB-1)
MTIVAVMEGACPRLEEQIRLLGWPRVAAPGEGGRNDERAVMVREAFTPQALIDCLSPPWI
GGIEAAGSGGHPVGSCFRRHLAEGGLGLSLRSDTAYGADIAVPFADALATRLLAPGTDSF
DLGFVVQELVSNALLHGNLEVGGIDCEGGGGLEGFGERIEAALGDPGRAGRRVQISASVV
GDRLEVAVEDDGPGFDHVDGHANPRRPHGLALLESMVSDLHTEEGGRRAIATMVIPTRQL
RAEPLGLDDVRVLVVDDNLMNRVLMETLLRRMGVGQVETVESGEKGLAAIEREKPDLVLL
DVMMPGMDGFEMCRRLRRLHPLTELPVIFVTALDGPADRNACFAVGGSDMVAKPIDANEV
AARVGVHLRLGQAMDRLTAYQDRVHEELRAARGAQAALMPTSAELSSIRIRQGLVVDGRI
ESSSELGGDFWTVLPAGPNQMFLLVADFTGHGPVAAFNVFRLHLLLSRLPRRMPTPSALL
EYLNLELKAVLRSGQFAAAFAALIDVEEGVMTYAGAASPPAVLVVDGEVRFLDADGPPLG
AFVDAEYEESRIALPRGAALLAYSDALVESQGSDGRMACDQETLREWVLGAQPGHSLADE
VLARFREKVPGEPPDDLTLVSIRRP