Protein Info for AMB_RS18155 in Magnetospirillum magneticum AMB-1

Annotation: 3-hydroxyisobutyrate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF03446: NAD_binding_2" amino acids 3 to 162 (160 residues), 174.8 bits, see alignment E=2.2e-55 PF03807: F420_oxidored" amino acids 4 to 93 (90 residues), 38.6 bits, see alignment E=2e-13 TIGR01692: 3-hydroxyisobutyrate dehydrogenase" amino acids 6 to 293 (288 residues), 419.5 bits, see alignment E=3.6e-130 PF14833: NAD_binding_11" amino acids 165 to 292 (128 residues), 125 bits, see alignment E=3e-40

Best Hits

Swiss-Prot: 52% identical to MMSB_PSEAE: 3-hydroxyisobutyrate dehydrogenase (mmsB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K00020, 3-hydroxyisobutyrate dehydrogenase [EC: 1.1.1.31] (inferred from 100% identity to mag:amb3587)

MetaCyc: 53% identical to 3-hydroxyisobutyrate dehydrogenase subunit (Pseudomonas putida)
3-hydroxyisobutyrate dehydrogenase. [EC: 1.1.1.31]

Predicted SEED Role

"3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)" in subsystem Isobutyryl-CoA to Propionyl-CoA Module or Valine degradation (EC 1.1.1.31)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.31

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W184 at UniProt or InterPro

Protein Sequence (296 amino acids)

>AMB_RS18155 3-hydroxyisobutyrate dehydrogenase (Magnetospirillum magneticum AMB-1)
MASIGFIGLGNMGAPMMRNLIKAGHKVAAFDLSEAALAAAAEAGATACTKATDAARGAEV
VVSMLPAGAHVKSVMLGEGGLFAAASKGTLFIDSSTIDVATARLLSDEASRAGHALIDAP
VSGGVGGAEAGTLTFMVGGADDSFARAEPILAVMGKTIVHAGGPGNGQAAKICNNMLLGI
SMIGTCEAFALAEKLGLDAQKLFDISSKSSGQNWSMTSYCPVPGPVPASPANRDYKAGFA
AAMMLKDLKLAVEAAQTAGASIPLGAEAAQLYAMMAGMGQGGLDFSGIIHMLRGKA