Protein Info for AMB_RS17820 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 697 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details amino acids 28 to 29 (2 residues), see Phobius details transmembrane" amino acids 12 to 27 (16 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 391 to 413 (23 residues), see Phobius details amino acids 425 to 446 (22 residues), see Phobius details amino acids 452 to 473 (22 residues), see Phobius details amino acids 498 to 523 (26 residues), see Phobius details amino acids 542 to 560 (19 residues), see Phobius details amino acids 567 to 586 (20 residues), see Phobius details amino acids 592 to 613 (22 residues), see Phobius details amino acids 638 to 658 (21 residues), see Phobius details amino acids 664 to 685 (22 residues), see Phobius details PF07690: MFS_1" amino acids 303 to 620 (318 residues), 110.9 bits, see alignment E=9.9e-36 PF00083: Sugar_tr" amino acids 332 to 476 (145 residues), 29 bits, see alignment E=7.7e-11 PF13347: MFS_2" amino acids 424 to 619 (196 residues), 31.8 bits, see alignment E=9.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3523)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1E8 at UniProt or InterPro

Protein Sequence (697 amino acids)

>AMB_RS17820 MFS transporter (Magnetospirillum magneticum AMB-1)
MILDRTRPLFIRLLVLVALVLVPPVAWIANEAMGEFTRGLTPEMDKKAEAIGRDLEQSVE
RAVGYGIPLDQLQGVGQFFAPVLAANPELRYLAITDRGGKVLFAEGVEPSALQSVYGGAD
FKADMEHSRKFTLGGFVDLAQPMNIKGTRIGHVHVGMDQDYVRGRVQEILIDLAVVTLVA
FLVAVEILLFVVTFNITGPMRVVGIVMDRVRRGDFSASAGVTSDDEVGRFVHGFNSAIRL
ADQLFRRLEAYVDEVKAAHFDPGVVEKVKDIESRVRFLFRFARNGQTEIVNEHQATDIRL
PLFLFVFAEEISRSFMPLYIRDLYAPISGLTPELVMGLPIALFMLVIALASPSASLLANR
LGARRVFLIGLVPATIGFVMSGLAFSVYDLIVWRVATALGYAFITMACQGYIAQVSRQQT
RAQGLGVYVGAVLTASVCGTGIGGVLAERVGFRVTFIVAAVLTVVTAILIWRLLDSAQPV
AEGASPRKRDFLRLLRNWRFSALVVFAAIPAKIALTGFLFFLVPLTLSQYPAIDLGDMAR
MMMAYPVSVVLLSPLAARFADRVGWRAGLLAVGGLIGGAGLVLPAFWGEPVIAVQVAILM
LGISHGLSASPQLAMIPDLCWTECRAIGQTNVLAFLRLAERIGSFAGPLLAAVLIPLYGH
QGAIVALGWVVLAMAAVFAVLSFAYHAGPHIEAEWDE