Protein Info for AMB_RS17790 in Magnetospirillum magneticum AMB-1

Annotation: rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 26 to 49 (24 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 151 to 168 (18 residues), see Phobius details amino acids 174 to 190 (17 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 317 to 344 (28 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 27 to 375 (349 residues), 423.5 bits, see alignment E=3.5e-131 PF01098: FTSW_RODA_SPOVE" amino acids 51 to 374 (324 residues), 332.4 bits, see alignment E=1.7e-103

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 100% identity to mag:amb3517)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1F4 at UniProt or InterPro

Protein Sequence (387 amino acids)

>AMB_RS17790 rod shape-determining protein RodA (Magnetospirillum magneticum AMB-1)
MLRPLPRTPSRLNRTEMSMRDKIWQINWSLIAVLTAIAGVGFATLYSAAQGSIEPWAFKQ
MIRFAIGIGLMISVAMIDLRFWMRHAYTFYAIAFVLLVLVELKGTIGMGAQRWIDLGFIQ
LQPSEIMKIALILSLARYFHGAGQQEIGRPLFLIPPLIMVFTPAILVLKQPDLGTAMMLV
MSSGALFFMAGVRMWKFVVVIAGAGAAVPVAWQFLREYQKKRVLIFMNPEDDPLGAGYHI
TQSKIALGSGGVFGKGYMMGTQSRLNFLPEKQTDFIFTMFAEEWGMMGGLVLLGLYALLL
AYGYAIAIRCRSQFGRLVAHGIATTFFLYFFINTAMVMGLVPVVGVPLPLISYGGTAMLS
LLVGWGLVMSAYIHRDIPISRRGMGED