Protein Info for AMB_RS17675 in Magnetospirillum magneticum AMB-1

Annotation: flagella basal body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 180 to 313 (134 residues), 122.4 bits, see alignment E=6.6e-40 PF13144: ChapFlgA" amino acids 191 to 313 (123 residues), 109.4 bits, see alignment E=1.8e-35 PF08666: SAF" amino acids 193 to 250 (58 residues), 24.4 bits, see alignment E=5.2e-09

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 100% identity to mag:amb3494)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1H7 at UniProt or InterPro

Protein Sequence (324 amino acids)

>AMB_RS17675 flagella basal body P-ring formation protein FlgA (Magnetospirillum magneticum AMB-1)
MIRRLCLRATIAGLAFAAALGGALAAELPPQLKPSVVLNGDAITLGDIWENIGDKAGTPL
ANAPAPGKRITLETRWLMAVAQSYGIDWRPASPFERSVVERAGQSVDIRAIETELKEALS
MEGAPAGASIEISNRQQLHIVIPATASPTVAVKDLAYDPRMNRFQAVVEAPAGAPNSVRF
KVMGSVYASARIPVLAHAMGRGDVIREDDIQWVDVREEVVRRDIISNARMLVGQEPRYQL
RAGVPVRTNEVQKPVVVAKNSSVTIMLRSKFMTLTAQGRAIEDGSVGDVIRVTNVQSKQT
VDAKIEGPGQVSVMPGGLRTLANN