Protein Info for AMB_RS17590 in Magnetospirillum magneticum AMB-1

Annotation: HlyD family type I secretion periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 177 to 195 (19 residues), see Phobius details TIGR01843: type I secretion membrane fusion protein, HlyD family" amino acids 178 to 589 (412 residues), 370.3 bits, see alignment E=6.8e-115 PF13437: HlyD_3" amino acids 439 to 543 (105 residues), 52.9 bits, see alignment E=5.6e-18

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 100% identity to mag:amb3476)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1J5 at UniProt or InterPro

Protein Sequence (589 amino acids)

>AMB_RS17590 HlyD family type I secretion periplasmic adaptor subunit (Magnetospirillum magneticum AMB-1)
MSQPPAPPPPPQSLGQITPVQVPAGQAIPGAPPPPAPAGAGPQTSQLGEGPQANQAGAGP
QMSQEQMMQAMAAMMGGGGPPGAQKGPPPTAMQSIAGGLKTFWKTLCWLMAAPEKPEDAP
KGLLAWPRRLLTGTRDWFLPSLNPIGPAPLQDYHAPEFGSRLYSLANSYPLPTWRPLARA
VMSLTAIFIVWAFVAHLDEVAIAEGEIVPEGKVKVIQHLEGGVVREIMATDGSEVKEGAP
LILLDLPVSSLNKEELQARMDGYILQRARLEAELHDKPVVFPEEEAKRQPGLVESERRSF
EARRQALNATLTVLRDQVRQKGLEVQEYETKSRSIATSLRLSQERLAMSTDLIKSGLASK
MDHVQIQAQVEDLKGQLDSVRASIPRAEAAQQEAKGRVSEELARFQRTAQSEMSEAELNI
ARTRELFIQATDQQRRTLISSPIDGIVKNMRSNTIGGVVRPGDPIMEIVPLHERLQVDAK
LNPMDRGYVQTGQRATVKISAYDYTTYGGLDGDVILVAPDTTVPQTPNAQPYYRVVVQTD
RAYIGDETAKRLISAGMQATVEIHTGTRSIMEFLVKPVIKLRHEAFRER