Protein Info for AMB_RS17245 in Magnetospirillum magneticum AMB-1

Annotation: TIR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 836 transmembrane" amino acids 213 to 231 (19 residues), see Phobius details PF13676: TIR_2" amino acids 34 to 153 (120 residues), 89.1 bits, see alignment E=1.5e-28 PF13424: TPR_12" amino acids 608 to 679 (72 residues), 43.7 bits, see alignment E=1.2e-14 amino acids 646 to 719 (74 residues), 68.7 bits, see alignment E=1.8e-22 amino acids 687 to 761 (75 residues), 51.2 bits, see alignment E=5.2e-17 amino acids 773 to 827 (55 residues), 34.4 bits, see alignment 9.3e-12 PF13176: TPR_7" amino acids 608 to 639 (32 residues), 14.6 bits, see alignment (E = 1.4e-05) amino acids 650 to 678 (29 residues), 14.7 bits, see alignment (E = 1.3e-05) PF13374: TPR_10" amino acids 646 to 684 (39 residues), 34.9 bits, see alignment 4.9e-12 amino acids 688 to 728 (41 residues), 36.7 bits, see alignment 1.4e-12 amino acids 731 to 770 (40 residues), 28.9 bits, see alignment 3.9e-10 amino acids 772 to 812 (41 residues), 42.7 bits, see alignment 1.8e-14 PF13181: TPR_8" amino acids 775 to 804 (30 residues), 19.4 bits, see alignment (E = 3.9e-07)

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3409)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1R2 at UniProt or InterPro

Protein Sequence (836 amino acids)

>AMB_RS17245 TIR domain-containing protein (Magnetospirillum magneticum AMB-1)
MRRDSSLRASPFPCQPQTPCYTWWQWAEGHMADFFISYTYTDLEWARWVDFVLREAGYDT
VIQEYDFRGNFITEMDKAVDECDYTLALLSPKYRASVNCQREWSAALAADPDKPQGKLLP
LRVVEMEVTGLLGPIIWHDLATAPNDRDAERRLFEAIKGKVRPSTRPAFPGRGRNIPAFP
GGRPAISNLGPRNPHFVGRVQLLERLDRQLKEGAVALTALAGLGGIISNLGPRNPHFVGR
VQLLERLDRQLKEGAVALTALAGLGGIGKSQTAQHYAHSRTGLEIVWWLRAERLETMLGD
LAELARRLGVAPEGHDLQQRARAALDELARRDSWLLVYDNAEDEDSVRDWLPQGGGAVII
TSRESHWGRIPLLEVDKLARAESVELLLDLSGDTDTAAAAALAHDLDDLPLALEQAAAFA
KVAGWTLARYGEEFTQAHARLLQQGKPVDYPATVATTWDISVRRVEEHNPAAAQLLTLCA
FLAADDIPLDLLRPAAHRLPSPLAEVLADPVDTAQAVAELARQSLVKAKHGMLSLHRLVQ
LVQRNRLSEDECRDWTARAFSAVYLVYEFKENDLTTWEAAGLLLPHAEAVAGRAETAEVE
WRATSWLLDKAGECLIKDGLYERAIDLRRRALSLAETKLPADDPPVATLLNNLAIAHYHA
EQWAEALPLLRRALAIYEAQYGPDRHEVAATLGNLAMVYLKLGDLPEAHKLTEQALTIGE
AHFGLDHPTVAVRLGNFANSLDDMGKPAEAEPLQRRALEILIAHFGEVHPLVAGSRHNLA
MTLTDLGRLEEAREMMGKALSIRQTLLAADHPLTILARGLLAEIDARIARRGGASS