Protein Info for AMB_RS17235 in Magnetospirillum magneticum AMB-1

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details PF05170: AsmA" amino acids 19 to 227 (209 residues), 108.3 bits, see alignment E=5e-35 amino acids 302 to 578 (277 residues), 104.6 bits, see alignment E=6.4e-34 PF13502: AsmA_2" amino acids 428 to 619 (192 residues), 92.6 bits, see alignment E=2.9e-30

Best Hits

KEGG orthology group: K07289, AsmA protein (inferred from 100% identity to mag:amb3407)

Predicted SEED Role

"outer membrane assembly protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1R4 at UniProt or InterPro

Protein Sequence (686 amino acids)

>AMB_RS17235 AsmA family protein (Magnetospirillum magneticum AMB-1)
MAHWNGGVGLPFGHRGMRMKKVLIAVGVVVILIIGALVALPALIPAERIQSEIVAGVKSA
TGRDLSIQGKLSVSAFPSLSVQVGNVALANPPGFTTKDLIRLGAVDVRLKLMPLLGGKVE
VDSFVLVDPVIVLETDRQGKGNWVFDSPTAPAPAAAKPADKPADKAASAASTGGLNDIRL
GDVRITNGKLIQIDGKTGAKQEVSDINLQVALKSLTDPLSAKGSLVWNAKKIELALGVTS
LKALMDGQSSALEVSVASEPVKLGLKGNAKGGAAPGVDGTLELTVPSIRNLAAWAGSPIT
MAGNGLGPLSINGKLAAGPGQVAFTQAAIAIDAIKAKGDVTVNTSGAKPAIKGRLDVDML
DLNPYLPPEGAPSKGGDGKAAAGSGGAPPAKAQQGWSDDPIDASGLKAADVDFALTCGGI
LVKKIKVGKSAVKLALHNGKLAADLTELALYQGSGKGRVALDGSQPGVGLDASFQLKGLQ
AEPFLADAADTDRLSGTGNFDVTVAGQGKTQRQIVSSLNGKGALAFLNGAIKGINLAAMA
RNVTSAFTGGAKSTEKTDFAELGGTFTIVKGILTNNDLALKSPLLRVEGKGTVDLPQRSV
NYRVDPKVVASLEGQGGGNAAGIVVPILVSGPWDNLSYRPDLEALLKQNVQNVGKAVEGL
IPGVGGGKSSGSAPTDGLNPMKLFGR