Protein Info for AMB_RS16900 in Magnetospirillum magneticum AMB-1

Annotation: UPF0262 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 PF06793: UPF0262" amino acids 5 to 156 (152 residues), 235.8 bits, see alignment E=1.1e-74

Best Hits

Swiss-Prot: 100% identical to Y3341_MAGSA: UPF0262 protein amb3341 (amb3341) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: None (inferred from 100% identity to mag:amb3341)

Predicted SEED Role

"FIG00450475: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1Y0 at UniProt or InterPro

Protein Sequence (157 amino acids)

>AMB_RS16900 UPF0262 family protein (Magnetospirillum magneticum AMB-1)
MPHRQKLAKIELVEKYQVRRAAEVEHERAVAVYDLLEENYFAPNGDFIGPYALYIKLEDT
RLIFDVRKEDETPLVQVPLPLKTFQSIVKDYFMICESYFAAIKKSTPSQIEAIDMGRRGL
HNEGSELLRERLGGKIDVDFDTARRLFTLICVLHIRG