Protein Info for AMB_RS16825 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 transmembrane" amino acids 398 to 417 (20 residues), see Phobius details PF08446: PAS_2" amino acids 14 to 115 (102 residues), 36.7 bits, see alignment E=9.5e-13 PF01590: GAF" amino acids 150 to 288 (139 residues), 45.4 bits, see alignment E=1.8e-15 PF00360: PHY" amino acids 322 to 494 (173 residues), 123.2 bits, see alignment E=1.2e-39

Best Hits

Predicted SEED Role

"Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-); Cyanobacterial phytochrome B" (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (496 amino acids)

>AMB_RS16825 hypothetical protein (Magnetospirillum magneticum AMB-1)
MTTLSMLEALVQRCESEQLNLSGAIQSFGGLIRIDSMSGTVTHVSSNIADFIGTDPAIIL
GQKLEALNFLPVASLNALPDQPGKRLRVDSVAEFLGERLDVLAVRGVDFILIELERSAAP
SAPIPVQQLQSPLLSVPYDDDEVMEHHNMLVQAFQTVTGYDRVMIYRFQEDWSGEVISEA
TTKALGSYLGLRFPASDIPAIARNLYILNPCRMIPDATAQPVPLLGLGDVPADLAWSDLR
SVSPVHLEYLNHMGVGASFSVPIRVTGKLWGLVACHSLKPHLLSHDQRSACVSLTNAYSL
GLTSHFAGRRIQSLDSLDRRIEKILEALAQHEDPLDGIDKMKDQLMEAMAAQGFAMAIGN
DVVITGEAPDLDGMGLIDDWFLNESRDTVVISDHLDDFFHGQVVLLAVVSGMVAIKARSL
RSGWVRFYWFRPALAQEVAWAGNPNKPVVEKAGVVMLSPRRSFEKWIEVKSGFSRPWTND
ERMTAARFRNTLLQWL