Protein Info for AMB_RS16800 in Magnetospirillum magneticum AMB-1

Annotation: IS66 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 543 PF13007: LZ_Tnp_IS66" amino acids 44 to 118 (75 residues), 62.2 bits, see alignment E=1.3e-20 PF13005: zf-IS66" amino acids 124 to 169 (46 residues), 56.1 bits, see alignment 7.9e-19 PF03050: DDE_Tnp_IS66" amino acids 184 to 485 (302 residues), 302.4 bits, see alignment E=7.1e-94 PF13817: DDE_Tnp_IS66_C" amino acids 492 to 529 (38 residues), 62.6 bits, see alignment 6.5e-21

Best Hits

Swiss-Prot: 61% identical to Y4HP_SINFN: Uncharacterized protein y4hP (NGR_a03340) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 100% identity to mag:amb3325)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1Z6 at UniProt or InterPro

Protein Sequence (543 amino acids)

>AMB_RS16800 IS66 family transposase (Magnetospirillum magneticum AMB-1)
MKSRRHPPPDDVAALKAALLRVEAELAVARAKAADDQAVIAHQKLQIEKLNRALYGPRAE
RTARLIDQMELVFEELAASATEDEIAAEQAVAKTTNVVAFTRQRPARKPFPDHLPRERLV
EPAPTTCSCCGSDRLRKLGEDVTETLEVIPRQWKVIQRVREKFTCRDCEKISQAPAPFHV
TPRGWAGPSLLAMILFEKFGQHQPLNRQAERYAKEGVPLSLSTLADQVGAGCAVLEPLIR
RIEAHVFAAGRLHGDDTTVPVLAKGKTDTGRCWVYVRDDRPFGGPAPPAAMFYYSRDRGG
EHPQGHLASYAGLFQADAYGGYAKVYAPDRKPGPILEAACWVHARRPFFIMADLAENARR
KARGKTTAPVSPLALEAVQRIDALFEIERAINGQTAEQRRAIRLEQSAPLVADLEIWMRE
QRAKLSRGNDLAKAMDYMLKRWPAFTRFLDDGRICLSNNAAERALRGIALGRKSWLFAGS
DRGGQRAAAMYSMIVTAKMNDIDPQAWLADVLARIAGHSANRIDELLPWNWRSLPRVADS
QAA