Protein Info for AMB_RS16775 in Magnetospirillum magneticum AMB-1

Annotation: IS66 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 PF13007: LZ_Tnp_IS66" amino acids 41 to 113 (73 residues), 65.8 bits, see alignment E=9.7e-22 PF13005: zf-IS66" amino acids 119 to 162 (44 residues), 67.8 bits, see alignment 1.7e-22 PF03050: DDE_Tnp_IS66" amino acids 176 to 467 (292 residues), 332.4 bits, see alignment E=5e-103 PF13817: DDE_Tnp_IS66_C" amino acids 474 to 511 (38 residues), 67.8 bits, see alignment 1.5e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3320)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W201 at UniProt or InterPro

Protein Sequence (515 amino acids)

>AMB_RS16775 IS66 family transposase (Magnetospirillum magneticum AMB-1)
MVPDALPTDIVALQAIIATQADALAAAQAGLMSKTLEVEKLRIELARLRRMQFGRSSEKI
SRAADQLELMLEEVESSAAAALAPAEDGASDGPAPKRNRARRPLPPHLPRTEVVHDSACT
CPSCGGAMRKVGEDVTEILDYVPGRFQVIRHIRPAYSCRACEGMVQAPMPSMPIERGLPS
AALLAHVLVSKYCDHLPLYRQSGIYARDGVDLDRGLLAEWVGKAATLVRPLVDAAEAHAM
AGGQIHGDDTPVPVLAPGIGKTKTGRLWAYLRDERPWDGPAPPAVAYRYSPDRKGERPQK
HLAGFRGHLHADGYAGFGELYLAKEGKPPPVTEVACWAHVRRKFHDVHVATTAPIAAEAL
ERIGRLFAVERAIVGIPPDQRRAIRQVEACPIMGDLAGYLDASLTRISGKSELAAAIRYA
RSRWSALTRYLDDGHLEISNNAAERAMRPLALGRKNWLFAGSDAGGDRAAAIYTLTETAK
LNGLDPEAYLRDVLTRIADHPVNRIADLLPWNIAP