Protein Info for AMB_RS16655 in Magnetospirillum magneticum AMB-1

Annotation: RTX toxins and related Ca2+-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1274 PF04773: FecR" amino acids 66 to 164 (99 residues), 27.2 bits, see alignment 1.1e-09 PF17803: Cadherin_4" amino acids 317 to 376 (60 residues), 26 bits, see alignment 2.8e-09 PF17892: Cadherin_5" amino acids 318 to 412 (95 residues), 67.5 bits, see alignment 1.9e-22 PF17963: Big_9" amino acids 320 to 411 (92 residues), 45.7 bits, see alignment 2.5e-15 PF00353: HemolysinCabind" amino acids 801 to 835 (35 residues), 25.1 bits, see alignment (E = 3.4e-09) amino acids 1129 to 1162 (34 residues), 21.7 bits, see alignment (E = 4e-08)

Best Hits

KEGG orthology group: None (inferred from 98% identity to mag:amb3299)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W222 at UniProt or InterPro

Protein Sequence (1274 amino acids)

>AMB_RS16655 RTX toxins and related Ca2+-binding protein (Magnetospirillum magneticum AMB-1)
MRLDPSILPAAPNLTSLMADSVPSGTDKPSAKAVIGKIDKLSGDAWIIHDGQKVPAKTGA
ALVQGDSVETAQGAQISLVFADRTTFTLKDKGLVGLDEFTYDPASKTGKESFLVAQGGFS
FVSGDIAKTQPDSARIVTPVMSLGIRGTTVAGSVGEGGATTVALLPDPGSNFVGEVAVSA
LSGGGQSFTLNSAGSGIVGATSAGSWSVSANAAAAVAALAPQPAPPPAVAPALPAAPAPA
PAGGTGAGGSKGAGQGAGAGGGAEAAVVDVAPPPPPPPPPPPPPPPPPPPPSPPAPAPPP
PPPAPPPPPPAPPPPAPVNNDPTSSAVTLPGSTAGSATTILKSDLLANASDPNHDVLSIR
LGSVSATHGTVTETATTVVFTPTTGYSGPATLSYTIVDGRGGLVTASATTTVSAPSHGLL
AEVASNPIVNGDFETGTFTGWVASLSPTVANGGSPLTNWMVYPASSLNGSHVALNGFDGG
VLDGNGAILYETPLYFHLQQPITLTGAPVHASLSFSFKVSGGPSFSVARDGQPTADRVFT
VHVTDGSGDVMPTVYTYTVPGTTVDAGAVHNVNIDLSSQMAALSPGTYTLDLQELVPQYY
TGPAEIQLDNIALKLSQGSATASEAVTADQGVSGWVLGLPATTASSDTVSFHIIDGSGNP
QSSLATTHGTASIDAITGKWTFTPLATLAANLSVTDTFVVGVVDDQTSQVAQATIQVNIS
SPVTSSGAVAHITSASTVVDANFSGLSGISTLEINTGSAALNLTLGTVAEAAGTGVVDGS
QATGSIVANASAYSTGLDITTGSGNDTITTGSGSDTIAGGLGSNIINAATGIDTVDYGAA
LSAITATIGSGSATVVHSGGTDTLSGVEIIQGSTFGDTFIVGVASTGSILGGGGSDVLDI
TALPTGNLALDGAGANESIHFDIAGRHMESLVRDLSLSGSNLVAVLDGGGTLSIASVTTD
TIIDPAGDTHRIVGQGGATTAGTDYVVVGTASDSSLTGNTGDDLLVWHSGNTSLVGGGGH
DLADFRHAAGAIVADMYGGTSAVIGGSTTVGLSGISEILGGNSADTLTAGTGEWMLAGGG
GNNVMDGSHGTTTVSYQDQVTGVTIDLAGGTATHGAYTDTLTGMGGAVGSDFADTIIGGT
GAEYLDGGFGANTVTGGSGVDTFVLHSSTSATATQSITDFAGDQFSLSDREFGLGSSGTL
AAANYAEGTATVSGSAQDFGNVNAGIVAIQNGANVELWHTTNMDAATSSNSHLVGTLENI
NTSALDNTNFHLAI