Protein Info for AMB_RS16460 in Magnetospirillum magneticum AMB-1

Annotation: B12-binding domain-containing radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 753 PF04055: Radical_SAM" amino acids 415 to 574 (160 residues), 66.6 bits, see alignment E=3.2e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3259)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W262 at UniProt or InterPro

Protein Sequence (753 amino acids)

>AMB_RS16460 B12-binding domain-containing radical SAM protein (Magnetospirillum magneticum AMB-1)
MNQLVKVSLVDPQTQQMVEAVGENVRFSAYRCFPMTGEPHEVDILARVSASLGSMGGKIA
FWKSGPFLDFFTQTVPQVLDCIAVVIDELGEAEDYKGRPLVRSIDDLPPDITAIFICETK
TEPRWRLERRVPAGINVFSPDSVKQFIELVPPHCWIPQDSGIYPFDIPGLKLTPGLDLVL
LDLPSKAGLQISVGLSYVHSALKRSSVRFQTLDADIIMYHRFHVRRLFDLGEQPLLRNGI
RFADDPWGYNERLWIDPRQWPLLLDYFAPDIDEIFRELKAARPKVLGMSVHQRNEWISRE
LARRVKREMPETMILVGGHSCVSETFGRGAFPEYDYMVIGEADMVVGPLVEQLARGERPA
NLPGVISKFDDPGRRFIPGPKPHNLDALGGIALDFFDDINAVYRSSTGYQGTAVPLTRGC
VWSRCTFCAERFSFRSRSPSLYVDELERIMATGRNPSFSASDSDFGGEPEVLRQICEEIV
RRGLRLVFSGQIRVNKKYDVEFLSLMKAAGVVGLNFGADAFTENTIRLQRKGYTIETLIK
NHEDCVKAGITPNINIVIGTPGETEKDIDDTIEFFKDNRSVFPLVNNINMCLLLQSSVYW
LNPEGHGIGFYGDKEAIYKKYYFGVPDHLWYSINPYVDKGVRAERFVRLVKGLQAANIPI
GGEVLANMHDALSGGGHTLYRQWIVDEEIMAGNPGRIALPDKAEAVGRSKIFDNHLIVPS
AAGDILALPYDDGMDRALKSLKIVYWSKDAVQQ