Protein Info for AMB_RS16355 in Magnetospirillum magneticum AMB-1

Annotation: ribonuclease E/G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 913 TIGR00757: ribonuclease, Rne/Rng family" amino acids 14 to 513 (500 residues), 527.2 bits, see alignment E=1.5e-162 PF10150: RNase_E_G" amino acids 208 to 479 (272 residues), 335.3 bits, see alignment E=2.9e-104 PF20833: RNase_E_G_Thio" amino acids 491 to 575 (85 residues), 106.3 bits, see alignment E=7.1e-35

Best Hits

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.4.-

Use Curated BLAST to search for 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (913 amino acids)

>AMB_RS16355 ribonuclease E/G (Magnetospirillum magneticum AMB-1)
MVKRMLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMREATNDRDEAEAIGEGHLAAEA
VAEQTDGSTVEDAPAEAGENGEAAEQAPRKRQVETVGGDDDAENERRRARLLRNYKIQEV
VKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDRRRLK
SIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVYEEAS
LIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFHRYQVE
AQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAADEVAR
QLRLRDLAGLIVIDFIDMEENRNNHAVERRMKEALKNDRARIQVGKISAFGLLELSRQRL
RPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEITVYVPTAIALYIL
NQKRSALAAIEERYEFDVLLSGDDTLIPPAFRMDKVKAEFRPDEPPRAAISMDDAAHRPP
AEPEPEEAEEEDDEDEEEAQPERSSRAREERGEEDPDSEAGRKRRRRRRRRRKPGDDRPE
QDGEAVAGDEQPRAEGESSAEGEAESEDDEGDAEGEGEGTRTEGGDDDQPRKRRRGRRGG
RRRRRRDGEGEGEGAEAGEGGETAGADGAEGEGVEGVTAPEAETVAAAPQDAAAEEAAAV
VEEAAPAAEEKPKRKRAPAKKKAEAKPEGAAPEEAPATAEEKPKRKRAPAKKKVDAKAEA
APAEIAVIEAPVAESVVAEPEVVAAEPVAAAPEPVVVAEEPVIAVSAPAPQTEAEPPAPA
KPPRKGWWNRLMS