Protein Info for AMB_RS16265 in Magnetospirillum magneticum AMB-1

Annotation: YebC/PmpR family DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 239 (239 residues), 310.1 bits, see alignment E=5.9e-97 PF20772: TACO1_YebC_N" amino acids 5 to 75 (71 residues), 105.7 bits, see alignment E=1.4e-34 PF01709: Transcrip_reg" amino acids 82 to 238 (157 residues), 196.3 bits, see alignment E=2.7e-62

Best Hits

Swiss-Prot: 71% identical to Y1808_RHOCS: Probable transcriptional regulatory protein RC1_1808 (RC1_1808) from Rhodospirillum centenum (strain ATCC 51521 / SW)

KEGG orthology group: None (inferred from 100% identity to mag:amb3220)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>AMB_RS16265 YebC/PmpR family DNA-binding transcriptional regulator (Magnetospirillum magneticum AMB-1)
MAGHSQFKNIMHRKGAQDAKRAKVFTKLIRELTVSAKSGMPDPAANPRLRAAIVAARAAN
MSKDTMDRAIKRGAGGEDGTNYEEVRYEGYGPGSVAIIVEGLTDNRNRTATEVRTAFNKN
GGALGETNSVSFMFDRVGAIRYPASAAGAEAMFEGALDAGADNVESDEDGHEITCAPDDL
GAVRDALEAKFGTPEYARLDWKPQTTVPVADEETARTLLKLLDTLEDNDDVQRVQANFEI
PDDIMEKLG