Protein Info for AMB_RS15960 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details amino acids 417 to 436 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3166)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2F5 at UniProt or InterPro

Protein Sequence (631 amino acids)

>AMB_RS15960 hypothetical protein (Magnetospirillum magneticum AMB-1)
MPSPHSLFVRFHRIYGGFGAIAFRVCLVITFPFSLGLIANVSRDGFWPLAIFAVLFITGW
KIFVSPPQSILISAEQFPPPNGRPGILPPDRPRDEWQSHHFMIAFLFKLALVGTWISLPF
WITWAIWHDPQMKEGAGFGMIFFPFAGGLIEGTLRGHTRTLKTAIASTYLAPAKDSLARP
LAEALPASPKASLPWPPLVTTVLALPLTVQAGLVAKQLGSHTDSPFLVGTAVISAFVLGL
WCAWTAHGRRDLVKLAGDAAFLGVTALVLIMIGAITGTMVGGALSKLFGHIGVQVGLLGG
AIGGHFTVSYWMMGEWRRGPSFGSRSGSINGPGWILQAWQPDAEVLCPVSMPDGVFFTPP
PKAVGPVVAAWTSMRSDVMPLSPLMRRIHVLSMTMLFAVTAWLAASGMQLPPVEQPAWGF
VGAIYGAALGWVLTSFTETCRFVGRDGFACASFEGAPPMITISSALAFSEAHALYSEQIQ
MTSQDIGGMVTGAETYSYLWCDNQGRKLFQLDGKFHQRNPREKSRAELDRLAAWQWTAFC
LDRYRLALHTGSTLYFEAGGTRIAITANTATVVIGEERHPIHEYTIDNGVLYLTVEDEAK
DRAMQGARIGNFSCLLILLAERIRPSHQISG