Protein Info for AMB_RS15685 in Magnetospirillum magneticum AMB-1

Annotation: 30S ribosomal protein S5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 TIGR01021: ribosomal protein uS5" amino acids 39 to 193 (155 residues), 211.4 bits, see alignment E=3.1e-67 PF00333: Ribosomal_S5" amino acids 42 to 104 (63 residues), 98.8 bits, see alignment E=1.4e-32 PF03719: Ribosomal_S5_C" amino acids 118 to 188 (71 residues), 102.1 bits, see alignment E=8.7e-34

Best Hits

Swiss-Prot: 100% identical to RS5_MAGSA: 30S ribosomal protein S5 (rpsE) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K02988, small subunit ribosomal protein S5 (inferred from 100% identity to mag:amb3113)

Predicted SEED Role

"SSU ribosomal protein S5p (S2e)" in subsystem Ribosomal protein S5p acylation or Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2K8 at UniProt or InterPro

Protein Sequence (210 amino acids)

>AMB_RS15685 30S ribosomal protein S5 (Magnetospirillum magneticum AMB-1)
MARTPSSDRPERGRGGERGDRPNRGRGGAEQTPREREESEFVDKLVHINRVAKVVKGGRR
FAFAALVVVGDAKGRVGCGSGKAREVPEAIRKATEQAKRNMIKIALREGRTLHHDAYGHF
GAGRVILRAAPAGTGIIAGGPMRAVFETMGVQDVVAKCLGTSNPHNMIKATFDALINLAS
PRHVAAKRGKKVGEIIGRRDGAAAAAAAGV