Protein Info for AMB_RS15675 in Magnetospirillum magneticum AMB-1

Annotation: 50S ribosomal protein L15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 TIGR01071: ribosomal protein uL15" amino acids 2 to 148 (147 residues), 155.1 bits, see alignment E=5.3e-50 PF00828: Ribosomal_L27A" amino acids 27 to 149 (123 residues), 128 bits, see alignment E=1.8e-41

Best Hits

Swiss-Prot: 100% identical to RL15_MAGSA: 50S ribosomal protein L15 (rplO) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K02876, large subunit ribosomal protein L15 (inferred from 100% identity to mag:amb3112)

Predicted SEED Role

"LSU ribosomal protein L15p (L27Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2K9 at UniProt or InterPro

Protein Sequence (159 amino acids)

>AMB_RS15675 50S ribosomal protein L15 (Magnetospirillum magneticum AMB-1)
MKLNELRDNEGARYQSKRLGRGIGSGKGKTSGKGVKGQTSRTGVAINGFEGGQMPIYRRL
PKRGFHNPNAKHFAVINLGRLQKAIDEKRIDAKATITAEILSAAGLIGKVLDGVRLLGHG
EIKAKVSIEVTGASAAAIAAVEKAGGSVTVAAPKAVAEG