Protein Info for AMB_RS15450 in Magnetospirillum magneticum AMB-1

Annotation: sulfoxide reductase heme-binding subunit YedZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details amino acids 30 to 30 (1 residues), see Phobius details transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details PF01794: Ferric_reduct" amino acids 47 to 160 (114 residues), 69.6 bits, see alignment E=1.3e-23

Best Hits

Swiss-Prot: 59% identical to MSRQ_RHORT: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: None (inferred from 100% identity to mag:amb3069)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2Q2 at UniProt or InterPro

Protein Sequence (218 amino acids)

>AMB_RS15450 sulfoxide reductase heme-binding subunit YedZ (Magnetospirillum magneticum AMB-1)
MDKLLRQGWVKPLLFAVCLIPLGLLVWRGASGGLGANPIEATNRFLGDWALRFLLIALAV
TPLRQMTGWNAVARWRRMLGLFAFAYVVLHFSSYVGLDQFFDWSAIGREIVKRRYITLGM
VAVVLLIPLALTSTNAMMRRLGGRRWQALHRLVYVIAPLGVAHHWMMVKKDITEPAIHAA
ILAVLLGWRGVARLRHNGAATTARPTACSVPQSSSPSP