Protein Info for AMB_RS15200 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 731 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR03509: decaheme-associated outer membrane protein, MtrB/PioB family" amino acids 46 to 731 (686 residues), 749.7 bits, see alignment E=1.6e-229 PF11854: MtrB_PioB" amino acids 61 to 731 (671 residues), 533 bits, see alignment E=6.1e-164

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3018)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2V3 at UniProt or InterPro

Protein Sequence (731 amino acids)

>AMB_RS15200 hypothetical protein (Magnetospirillum magneticum AMB-1)
MMFVKILRSGALAAFCTLTATAQADEFDIDEAPAVSPAKKPVPMNEAGVHVGAQRGGSAA
FNRFGGTPESGVFGGGWFHLQQRDAAEGGGTFYLKADGENVDFRSNALPPDAAAAVRMGQ
QGVWDLRLHYDGIVFRQADNYHTLFNGSGQLLNGLTPASINATSTNAAGVARVNQYLSAV
EVGTRRDRAGGAFSYTGLEEWKFTTRLDHEHKHGTKANSVMFLSNSNFASILEPVNYDTD
RFALNAAYTTRPLQAQISYVFSNFTNNIAEYVTRDPFIGATHAGYDGTRYSLPPSNSEHR
LKAQFGVNLTDTTRIATNLSYGLQLQNEAFAARHYEQAPRLGASTYDGMIQTLYGNVVMT
ARPLPDWTLRAAYTADDRDNMSASYWQKPPYRADGTAVFNGNTGIHTNPAYSFFNQKGEA
EVGYRLTRSTKLTADYAYRNSLRSDSVTNRNEESTYGGRVQSTLAEGLTGTLGYAHSNRQ
ATVFLGNRGWNEMGRTVTAESGLKIFSYAARDRDEAKANLNTVFGDGVVVGTTARWIEDR
FPETLYGVTNNHILSLGGDASFPAGPGVTAHLFYTYMENFTGMKMNASATGTLWTLHNTD
STHALGAGLEWKVCDSLKITLDNVLTYGNTSFEEGSQWRGTGTASAANTATNLPDSRSLL
NSLKLSGEYQVSDGLFLGLSGLWERYSSKDYLYNQAAASTANASTATVVLPGEGSPSYNA
GQVIASARMLW