Protein Info for AMB_RS15180 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 676 transmembrane" amino acids 538 to 562 (25 residues), see Phobius details amino acids 574 to 593 (20 residues), see Phobius details amino acids 605 to 624 (20 residues), see Phobius details amino acids 636 to 659 (24 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 43 to 321 (279 residues), 208.3 bits, see alignment E=7.2e-65 PF13738: Pyr_redox_3" amino acids 116 to 314 (199 residues), 30.9 bits, see alignment E=6.8e-11 PF00070: Pyr_redox" amino acids 185 to 265 (81 residues), 58.6 bits, see alignment E=2.9e-19 PF18267: Rubredoxin_C" amino acids 356 to 417 (62 residues), 55 bits, see alignment E=2.7e-18 PF04324: Fer2_BFD" amino acids 458 to 507 (50 residues), 55.6 bits, see alignment 2.2e-18 PF01292: Ni_hydr_CYTB" amino acids 532 to 670 (139 residues), 51.5 bits, see alignment E=4.4e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3014)

Predicted SEED Role

"Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)" in subsystem Nitrate and nitrite ammonification (EC 1.7.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.7.1.4

Use Curated BLAST to search for 1.7.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2V7 at UniProt or InterPro

Protein Sequence (676 amino acids)

>AMB_RS15180 hypothetical protein (Magnetospirillum magneticum AMB-1)
MDRLGRLGSVVADRPGGAGPLCAPEEDMTATPAQVSPPLHRQRLVVVGNGMAALRTVEEI
LALAPDRFHITVLGAEPHGNYNRILLSSVLAGDKQVGDIVTHPPGWYAERGIALRTGDPV
VSIDPEHRRVSTASGHVVAWDRLLLATGARPLMPALPGAGLEGVYGFRTIGDVQAMLASA
GRHRRAVVVGGGVLGLEAAWGLRRQGMAVTVIHLTPWLMERQLDEVAAAMLRHDLERHGI
ACLTSAQAARLEGRERVEAVTLSDGRTIAADLVVMAVGIRPNTDLARQAGLEVGRGITVD
ARMRSSAPDIFAVGECVEHDGQCYGLVMPLWDMARVCAHHLTGGEGERLFTPPSLSTRLK
IPGIALFSAGEPAAANDDDRELIHHDPGQSIYKKLVLRRGRLVGAVLYGDVEDSARVWQW
LCDGDDVGHLCAGNLCLGRISGQCAAADPLENLPDDAVVCHCNGVTKGAIVAAIAEHGLT
SLEQVTARTRACSGCGQCAALTARILARTLGEDGAEALAAETRRSEIRAGAFRLWHRANA
VLMSVLAVTGLFLHFAGTPAALLRLEWAFGLHKWSGLTLVAAYGAFLGLTALFRRRWRAN
AEGMVMFVLMPALVVTGLAFLWPVLLPQEPQKVNGIAWVAVVHTVLAIALLMYLIHHLGT
APVQWWRKRKARAFGG