Protein Info for AMB_RS14930 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1931 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01835: MG2" amino acids 631 to 715 (85 residues), 38.7 bits, see alignment (E = 2.6e-13) PF07703: A2M_BRD" amino acids 1015 to 1169 (155 residues), 72.4 bits, see alignment E=1.2e-23 PF00207: A2M" amino acids 1237 to 1305 (69 residues), 42.1 bits, see alignment (E = 1.6e-14) PF17973: bMG10" amino acids 1780 to 1914 (135 residues), 81 bits, see alignment 2.3e-26

Best Hits

KEGG orthology group: K06894, (no description) (inferred from 100% identity to mag:amb2966)

Predicted SEED Role

"Large extracellular alpha-helical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W305 at UniProt or InterPro

Protein Sequence (1931 amino acids)

>AMB_RS14930 hypothetical protein (Magnetospirillum magneticum AMB-1)
MTVLHRVLAVVLALLVFAPVPSSWADDTVRRPGNAQVVPEHFLRSWDPVTVFFDADTGPA
KGGAEDHPERVVTLDPPHPGAFAWKDARTLQFRPAVAWPPMGRFAWTVQGRTQDLVTLMS
GPVSSEPAEGKTGLDPVEAITLSFREPIAPEILARLVTIELRPLPGVGGESSRTLNAADF
DVKVMERLRPADPATYVLNLHHPIGLGTKVVVHIRLAPDQTVGREEQRIAFATAEAFHVT
RFGCRDTGYPAAPEGVSYARERALQCPADERSVMLAFSGSPKPVGPIEGRNLVRLSPQVD
DLRFETVGNTLVVKGRFEADTLYQVRLEPSALSDTKGRPLHLTAANQLFLSFPAKPGFVK
FATGEGLAERFGPQMVPVKTRGVERLDLRIHPIDPLDRSLWPFPADNMVIDESARPPAPG
EEPKPWTNTYSVPDDTIAQHIRAFGSPSISELVSVPAGRGNATASFGLNLRPHLARIAGV
GKPGHYLVGIRRLENKSSRVWMRLQVTDLSLTAVEEADRVRFAVTSLSTGLPVEGATIRL
EGREAKGDGLPAQLTTGPDGMVAWQAPGQGNDAIRRIVVAKDGDTLVLNPARPPRFYAEG
GWRESSYYDGWLSWVTRPLEDRKDPAKDLCHIFTERPIYRPEEPVHIKGYVRKGEAGKLE
LSAKPGNLVVQAPDGAEWRYPLVINEFGSFYHKFDAKTVATGIYKVFVDYKAPGATRKES
EDEETAEDANGEAGGGRCHVAKFKKEAYRLPRFEVQLHAPLSVGLDAPFPVGLTTEYYAG
GVVAEQPLRWRVTQVPFAWTPKARPGFLFSADQRFSGNQPFRSSPVLEREGKTDPQGAAR
LVLDPTIEPTAQPRKYVVEATVVGDDDQSVTNTQEVLALPPFVLGLKLPRFIEKTDRLEP
LVVVDDAQGKPVAGQKVVVRLLKRQWNSILQATDFTQGSAKYVTEVVEDKVAETTVTSTA
EPFKVPFPINGAGVYVVEVESQDRLGRLQTVKVDLFAGGDRPATWSRPPAEVFSVAPDKT
AYAPGETAKLVLQSPFQNGQALAVIEEPDGRNLYEWVAVRNGYGTLALPIKAEYMPRLPV
HFVLMRGRLKGDDDQVGIHADLRKPATVAATQWVTVTPAKNLVKVEISAPRKAQPGQDVD
LTVKLADDQGKPLAGEVTLWMVDQAVLALAKEARLDPLPQFIVPRDSKAKLRDTRNSVFG
VLPLQEEPGGDEGDDGSPLLRATVRKNFTPVPYYEPSLRVGPEGTATVTVRLPDSLTNFK
LRAKAVSGPSRFGFGTGDMQVRLPVLVQPALPRFVRPGDSFQLAAIGRVVDGGGGPGRAK
LKLAGLDLSGSDERGFEWQANVSQRLDFPVSVPVGASGEVLVTMGVDRASDGAKDAFQVS
LPVQPDRDRVAERTIARLSGDAPVVLAAVTEPVRPGTLERDVVVADKDVVALAGGLDYLR
LYPFGCTEQRLSLARASLGTRQFGAALLGPDGSEERINATVRATQEWIGQSVADNGLVSY
WPGGRGYVAVTAWAVQFMAEAKAAGMAVDQPLLDKLVVALKQSLRSDYRDFVDGQSWSER
SWALAALTGAGQGDATYAAELARKAPYLRAEALAQVAWALARSPATPASTVTEMQQRLWS
SVVVKLDKGRDVYGGLQEAGGLSPLILPSETRSVAQILRASLAARPAEPRNRLLADALLG
LGKGDGWGSTNANAEALLALADWIRVGGRKGGDRAATVTFGGESRQLSLTDAAPVARTSL
PPGEARISLGAPTPEPLAVWARTSYVPSADGSTQPAAARGFAVDREVWKLAPDGTLGGRM
ALDAPSATIALAVGEVIEDHVTVVNSADRAHIAVVVPMAAGMEPLNPALATAPPEAKPSE
AVTRPPSYAAFLDDRISYFYDELPKGTYHFRIRSRATVPGRFIQPAAVARAMYDDTVNGN
GNGALVVVTRP