Protein Info for AMB_RS14870 in Magnetospirillum magneticum AMB-1

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1022 TIGR00229: PAS domain S-box protein" amino acids 64 to 192 (129 residues), 79 bits, see alignment E=1.7e-26 amino acids 193 to 317 (125 residues), 31.2 bits, see alignment E=1.1e-11 amino acids 323 to 448 (126 residues), 28.6 bits, see alignment E=6.4e-11 amino acids 453 to 579 (127 residues), 32.6 bits, see alignment E=3.8e-12 PF00989: PAS" amino acids 69 to 182 (114 residues), 31.3 bits, see alignment E=5.2e-11 amino acids 454 to 560 (107 residues), 30.7 bits, see alignment E=8e-11 PF13426: PAS_9" amino acids 80 to 183 (104 residues), 27.5 bits, see alignment E=9.7e-10 amino acids 464 to 570 (107 residues), 21.6 bits, see alignment E=6.5e-08 PF08448: PAS_4" amino acids 206 to 313 (108 residues), 33.8 bits, see alignment E=1.1e-11 PF12860: PAS_7" amino acids 330 to 446 (117 residues), 66.2 bits, see alignment E=8.6e-22 PF02518: HATPase_c" amino acids 904 to 1012 (109 residues), 79 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2954)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W317 at UniProt or InterPro

Protein Sequence (1022 amino acids)

>AMB_RS14870 PAS domain S-box protein (Magnetospirillum magneticum AMB-1)
MHKLLARQLRKAAEGSLDGTVDVARLIAMVDLAYEEADRERRLKDRALDVMQTEVEEMSR
RVAQEAEARFKLLMDNVGEAVVVFDVRGTIEGYNREAEKIFGYTADEVWGRNVSFLIPDE
SALLSSSLMAPPCGPNDVHVLGMGARDLLGERKDGTEFAAEIAIGEVSTGGHRQYIAVIR
DISLRRQAEQELRESESRFRDLAGSASDWFWETDEQYRLTFVSERIGNVLGVKPAAVIGN
TWFEIGLDDQPDLAAAHRAVLDAKASFRDMVFTVGPPDGNDARVIRLSAIPTFAADGSFS
GYRGVGADITREARAVRQAIRAQEQLRDAIDSITDAIAVYDSKGKMVIWNQAYAETLRNA
ADYLAPGIAFEDVLRHGHRNKLFDIGTQDFEDWLVSRLKRFRHPDGVAFILKLSGGRWVQ
SRECPTREGGVVAVRTDISQLKRREEDLDQLRRRYELILDSAGEGIVGLDRSGRVTFANR
VAGEIIGRTSGDMIGQCFNCLINPDSARCDGTTCLPSASAVVEAYLSGTPGQVSGEVIRH
SDQQAIPVDYFVAPIIGDGQSSGTVLVYRDATLRLQSERSKEEQKHELEFLVAERTGELQ
RQINIRALTETALRASRERLKGITDSLFEGVLVVDRSGYISFANPSAKQLLDYHEDDRDI
EGHPLESLMKVGTPAGAVTFAGSPFQRSITEDLAIHDDDAVFISASGKSVAVAYACSPHG
EDADKRSVIISFRNIEALKRAQREALQASRLASVGQLAAGIAHEINTPIQYVGDNLRFIS
DSLIKLMSALTAARELGSEVGQIPALAEAAAKFEAAFRTTKIPFLVAEIPAALSESLDGV
AQIARIVLSMKEFSHPGTSSKIMTDINRALDSTLTVSRNVWKHSAEVERNFDPTLPPVLC
HAGELNQVFLNLIVNAAHAIESSGKPLPGRITISTGRDGGHVVITVADSGTGVPEAIRER
IFDPFFTTKEVGKGTGQGLAICRDVVMTKHGGSLDLGDNAGDGAVFVVRLPIDGAGKVGV
EE