Protein Info for AMB_RS14780 in Magnetospirillum magneticum AMB-1

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1979 PF00069: Pkinase" amino acids 19 to 256 (238 residues), 102.8 bits, see alignment E=8.6e-33 PF07714: PK_Tyr_Ser-Thr" amino acids 25 to 214 (190 residues), 62.7 bits, see alignment E=1.4e-20 PF13191: AAA_16" amino acids 299 to 487 (189 residues), 128.2 bits, see alignment E=1.9e-40 PF13185: GAF_2" amino acids 1340 to 1482 (143 residues), 50.1 bits, see alignment 1.4e-16 PF01590: GAF" amino acids 1340 to 1481 (142 residues), 50.5 bits, see alignment 1.3e-16 PF02518: HATPase_c" amino acids 1839 to 1971 (133 residues), 58.8 bits, see alignment 2.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2936)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W335 at UniProt or InterPro

Protein Sequence (1979 amino acids)

>AMB_RS14780 ATPase (Magnetospirillum magneticum AMB-1)
MNATPNYRLTEEVYSAGNTRVCRAVSLADGKPVILKILSGEQLSPDAFARYQREYEITSS
LAEVEGVTTVLAMENVQDSVMIVQEDVGGTSLARILEAGRLDLEEALALAVRITQILGRI
HRHRVIHKDFNPTNIIWNRQTGTVRVIDFGISSQLSQERAEFQSVKQLEANLAYASPEQT
GRVNRALDSRSDLYSLGVTLYQMLTGTLPFLSRGGIELVHAHIALMPPPPHEVSHGIPPI
LSQIVMRLMAKMADDRYQSARGLEHDLQRCLDQLRQTGTIASFPLGSLDASARLRIPQRL
YGREAETATIVEAFERSMVGETELLLVRGPSGTGKSALVHEVHRPLTERHGNFIAGKFDQ
YQRDVPFYAWRLAFEEFCSLLLKEDDSALDRWRTRILGAVGSLGKVITEVIPSLELIIGP
QEEVPPLAGEMALNRLNYVFGNFLAAVCRRDFPLVVFIDDWQWADAGSLSLLRSVMGNKA
LRSLLLIGAYRDNEVHAAHPFAVAVEDIRRLDARIGTISLAELSQKDVHGLVRDALNDSP
GLEVVARLIHEKTRGNAFFVVQLLTDLYEKSVIRLDPDSRTWTWSREEIESRHIADNVID
LMTAKIRRLPDTAQRALIHASCIGDRFELFTLAAILDLPPHQAAGDIEPALQEGILVPVG
LNYRLARLPSNRADVTYQFIHDRVRQAAHGLLDKESGERIHYGIARKWLAETSPDDTDLR
IFDIANQYNASLRLVADDEEKRQVLIINLTAGRRAKTATAYSTALHYFQIALDLKPSHFW
EVMGEVAAELYLLAAEVAFLTKDYRSMEEWIDEFLARRPSPLDQAGALKIRLQARVAQNR
LSEAVDVSLHALGLLGVRLPKAPGPLQVMANLLRTKLALRGKSLADLNALPPMTDPVRLA
AMELLGLTIPPAYWTSQELMALTVFQMVRDSVAHGYSPNAGYGFSWWGITESAMLGNIDR
GYDFGEFAIDLARRHQLNLQQPLFFAAWIIRKFKRPLKDTLPVFEQAYALSLEKGDFEYA
SYARNNHIQTLFHTGRNLGTLLQEMEQAHRDLQRFQIGSSLYWHSIWWQTALNFAEPKAE
PHHLGGPAYDEAQSLPQHLKVNDASTLFLLHCAKLMLSTFFHDQDNARLNAGKARAYLKG
GVGMHAFTLFHFYESLALLSGETRPSGKIMRQVTSNQKKLKIWADHAPMNYRYHWMLVEA
ERLRATGKSDRSLYCYDQAIDLARDSDCVHEEALAYELAARCLLGRRQERLASYYLRQAL
HLYERWGATAKSAHLAAEFSALLLTIAPMPLQQRISGGRSPTTSQGRPSGGDGQQARSFD
FLAVTQASQAISGEIVIGKLVTTLLEIVIEHSGAQKAMLIFKNGEDLSIQARGIARQAIE
VDSTPMAITEWAELPLPRSMVQYVARTAKSQIIHDTRQETQFSKDPYFLREKPLSVLCEP
IVHQGKVVGMLYLENNLTAGAFTEERLELLRLLSSQAAISIENAILYAEMEKRVEQRTHE
LAESLKTVNAKSRQVSTLFNNSGQGFLSFGPDLIVESEFSQACLSFFGHSPAGHAIDQLL
LPDDPHGRNTFRSCLEEALTDEDPDRRHIYLSLLPEEITIGATTLKAEFKPLDHAVMAVL
TDISEEKALAAQVARERTRLEMIVAAVTSGNDFFDAVAEFESFIHHDKMAWRDRDAMALY
RAIHTFKGTFNQLGFHLVPAALHKVEASLQQLAEIDDLPAALATTFAPDWATLLAADLDA
VSSALGADFMERRGVVAIPPHQAKRFELYARGHLDPAETPKVLAELAAIRTVSLRQSLAD
YDKLIQQVCARLEKVVLPLKLTGTDLRIDPDAWGPFLRTLGHVFRNAVDHGIESPDSRLA
AGKSEFGTIACNIAITDGRIELEISDDGEGIDVETLRRRAIQLGINNAEEWSLVDLIFGD
GISSRSEATDLSGRGVGMGAVRSAVDGMGGNIDVRTTPGRGTCMLFSLPLPASNGAPVP