Protein Info for AMB_RS14765 in Magnetospirillum magneticum AMB-1

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 814 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 11 to 168 (158 residues), 36.6 bits, see alignment E=1.4e-12 PF00672: HAMP" amino acids 215 to 265 (51 residues), 32.6 bits, see alignment 3.3e-11 PF13185: GAF_2" amino acids 290 to 424 (135 residues), 55.1 bits, see alignment E=4.2e-18 PF01590: GAF" amino acids 294 to 421 (128 residues), 36.4 bits, see alignment E=2.9e-12 TIGR00229: PAS domain S-box protein" amino acids 470 to 543 (74 residues), 47.2 bits, see alignment E=1.1e-16 PF13188: PAS_8" amino acids 476 to 525 (50 residues), 37.4 bits, see alignment 6.7e-13 PF00989: PAS" amino acids 476 to 524 (49 residues), 35.1 bits, see alignment 4.8e-12 PF01627: Hpt" amino acids 654 to 717 (64 residues), 42.8 bits, see alignment 2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2933)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W338 at UniProt or InterPro

Protein Sequence (814 amino acids)

>AMB_RS14765 PAS domain S-box protein (Magnetospirillum magneticum AMB-1)
MKALLTAMERWTLGRKLVLGSLITMVIVIGVGVFGVSSQLRLSRSMELLAGAGVRVALSI
KGLQADYAVIGRALRQAILAADAPARQEALRQLEDARKRIRKTGAEIRPRLLKKENGELI
DRFERLYVAYGVLVDRALSRLEQGREDEARALVGSAEFQHAGAAVEQLLVQGAEISDANL
DAAAHDAVASAMASLWLFAALLVCGVAVALGASRLIGRSIRLPLFRLRDSVAEMAQGNLD
RSLPFADYPNEFGELSRAIGVLQAEARRMGAQRWIKTNQAAIQAELQTAESLPVLARNFL
AAIAPLLNVGRGVFYVWEEEERHLRLLGSYAHLERKSVHQTFRLGQGVVGQCALERQPIV
ITDPPEDYVHIGSALGEAPPRVIAALPVLHNARLMAVVELAAFDRFGPDQEALLEGILPA
LAMTMEILGRTVKTRDLLDETRRQAESMEKQAARLEEQAVELEAQQTEIRATEAWYRGII
EAAPDGMLVIDDRGMIILINPQAEAMFGHGSGELTGRPVEPLIPALMRQDYGTRQGHRLQ
GVRRDDTVFPLVAGLSRLPTIGGHGGCICVSLREIVVGEVPAPEPWPGAAPPLPEPIAPA
PEPAPETKPAPEAMPAARSADALPDLPGIDVKAGLATMANKLSLYTRMLIKFREGQGRFA
ELFAAAQADSDPSAATRAAHTLKGTAGNIGAKGLQAAAAALEHACKEGGPQDEIEVLLSN
TLAELEPVMAGLRRLEGAEPSTAPAISDAEVWVALGKLAALLEDSDSEAGDLLEGLLPKL
AGTALATALQPVAKAIDDCDLDEALVQLGKVKVP