Protein Info for AMB_RS14720 in Magnetospirillum magneticum AMB-1

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 145 to 163 (19 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 4 to 284 (281 residues), 177.7 bits, see alignment E=1.1e-55 PF00070: Pyr_redox" amino acids 145 to 222 (78 residues), 29.4 bits, see alignment E=2.9e-10 PF18267: Rubredoxin_C" amino acids 321 to 387 (67 residues), 27.7 bits, see alignment E=6.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2924)

Predicted SEED Role

"Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)" in subsystem Nitrate and nitrite ammonification (EC 1.7.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.7.1.4

Use Curated BLAST to search for 1.7.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W347 at UniProt or InterPro

Protein Sequence (416 amino acids)

>AMB_RS14720 NAD(P)/FAD-dependent oxidoreductase (Magnetospirillum magneticum AMB-1)
MARRYVIVGGGPAGVIAAETLRHQDASGSVTLVCGEPGPPYSRMAIPYAMAGKIDEAGTW
LRKDWNHYEALGIRLLHDRVATVEPAAKRVRLAAGGELSYDALLIATGSSPARPRIPGLD
LPGVHSCWTLEDLRRIDPMLQPGRRVLLLGAGFVACIILQSLVQRGVKVTVSCGASGRMV
RSMMDETAGGMIMRWCRAKGVEVLTAGRPTAIEQRDTGLRITLDSGKTTEADLVIVGTGV
KTNTAFLDGSGIAVDDGIVVDQYLRTSVDGIWAAGDVAQGFNCCTGLREVHAIQPTAVEH
GRIAAMNMSGIPTEFGGSLSMNTLETLGLISCSFGQWMGRDGGEQVRVVDEDHFRYLRLE
FFDGRLVGANTVGMTNEIGIIRGLIQTRLRLGAWLERLKRDPSRLAEAYVACAQGV