Protein Info for AMB_RS14545 in Magnetospirillum magneticum AMB-1

Annotation: NADH:flavin oxidoreductase/NADH oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF00724: Oxidored_FMN" amino acids 6 to 338 (333 residues), 214.5 bits, see alignment E=1.3e-67

Best Hits

Swiss-Prot: 44% identical to NAMA_BACHD: NADPH dehydrogenase (namA) from Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

KEGG orthology group: None (inferred from 100% identity to mag:amb2889)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W382 at UniProt or InterPro

Protein Sequence (371 amino acids)

>AMB_RS14545 NADH:flavin oxidoreductase/NADH oxidase (Magnetospirillum magneticum AMB-1)
MTQPRLFQPLSLRGLTVPNRVAVAPMCQYSAVDGVPQDWHLMHYGALAASGPGMVVIEAT
GVTPEGRISPKCLGLYDDATEAGFTRLVAALKSFGGGGAIGVQLAHAGRKGGSAPPWEGG
KFSPDGWQTISASAIAFDEGWPAPKAATAEDLARLKQAFVDAALRALRVGFDFIELHSAH
GYLLHQFLSPLSNRREDEYGGSLENRMRFPLEVIRAVRAVWPADKALGLRISATDWVEGG
WDADQAVAYAKAFKEAGIDYVCVSSGGLVSYAKIPLGPGYQIDLSARIRREAGIPTRAVG
LIASPQQAEAALADGSADLIALGRGFLDNPRWVWHAAQVLGAEMAYPPQYRAAGTRAWPG
AALARPNLAAE