Protein Info for AMB_RS14075 in Magnetospirillum magneticum AMB-1

Annotation: bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 TIGR00197: YjeF family N-terminal domain" amino acids 5 to 203 (199 residues), 126 bits, see alignment E=1.6e-40 PF03853: YjeF_N" amino acids 26 to 182 (157 residues), 126.4 bits, see alignment E=1.2e-40 TIGR00196: YjeF family C-terminal domain" amino acids 223 to 473 (251 residues), 177.4 bits, see alignment E=3.7e-56 PF01256: Carb_kinase" amino acids 240 to 457 (218 residues), 163.6 bits, see alignment E=5.9e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2798)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W3H3 at UniProt or InterPro

Protein Sequence (484 amino acids)

>AMB_RS14075 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase (Magnetospirillum magneticum AMB-1)
MSQEILSVEQMYRADALAGEGGISGERLMEAAGWAVARAARRLLPKGRVAILCGPGNNGG
DGFVAARLLARDGWLVRLSLLGEAGRLKGDAAVMAGRWTGAVEPLTLNSLDGCVGVIDAL
FGAGLARPLDGMARAVIEEMGRRRLPVIAVDVPSGVHGDSGAVLGIAPHCLATVTFFRPK
PGHCLMPGRLKCGELVVADIGIPATVLDSIVPTVRRNGPGAWVLPEIRPDGHKYSRGHAL
ILGGGEMTGAARLAARAARRVGAGLVTIAAPEGALGIYRAGDPGLLVTPSEPFDAALADA
RRNALLLGPGGGVGESLSGKVLAALATGRPCVLDADALSGFEGWSGELFRHLRDTVVLTP
HDGEFRRLFGEVPGSRLERARHGAHLSGAVVLLKGADTVVAHPDGRATITTDAPPWLATA
GSGDVLAGLIVGLLAQGMEPFEAASAAAWLHGRAAAAHGPGLIAEDLPEALPAILATMGR
LAHE