Protein Info for AMB_RS13490 in Magnetospirillum magneticum AMB-1

Annotation: DUF3971 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13116: DUF3971" amino acids 365 to 568 (204 residues), 42.2 bits, see alignment E=1.2e-14 PF13502: AsmA_2" amino acids 801 to 1013 (213 residues), 69.1 bits, see alignment E=6.7e-23 PF13109: AsmA_1" amino acids 880 to 1018 (139 residues), 35.3 bits, see alignment E=1.3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2682)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W3T9 at UniProt or InterPro

Protein Sequence (1052 amino acids)

>AMB_RS13490 DUF3971 domain-containing protein (Magnetospirillum magneticum AMB-1)
MVHGTVRSLFQLLGAVLVALLLAIPLAAWRLSHGPISLEFLTPYIEEALTARDGSLMVRL
DSTLLQRGDDERMLEIHVRNVRAYVAGSDLPVVAMPDMALSLSGRALLRGVIAPNSIRLN
RPSLTLVRDASGQLQFGLPDGGGDDAGVVIARIKDALLGDPDPAKPGRSLQSFSIRGADL
RVEDRKLGTTWHAPGADLAIRRVPTGIQATGRIPLDLAGEVGEVSLAASYTKADGAADAE
LRLHGIRPAVLARFGGPAVHLGVIDMPLAGSVRARLDGSGVLEKLAFDLSGGAGRLDLPA
PFNTVHQVGSASLRGELTKGMTRLDLTEVRLDLNGPTFALAAVVDGLGGETTVKAEGSLR
DVPVDQVHDLWPNGLAQNARDWVIPNLSKGVVREATITISARSPSGRFDDVILDHLGGEI
RPEGVTVDYLHPMPLARNTAAVCTFDATSFRIALNAGEVYGLRLKEGTIVFTGLDKDDQF
ADIELVIAGPATDALKLIDNPPLRYAQALGIEPARVTGDATAKVRLKFPLLKTLRLDDVG
IKANATVKKVAIPKVMMGLDLSDGTLELDVDAKGLDATGPVVLAGIPGHLAWRENFSKGQ
PFRSRYFLKAPAVGEEQRKLLGLDGVPFVAPFTSGPVGAEINATFFDGGRAEIDAKVDLA
GAAMALPGLGWKKPEGKPGSAEVLVRLDRKLVSSVPRFAVKAGDLDVAGSVAFNPEGGAR
KVDFTRARYLRTDGEGSISIRPDKAGLDIVFKGASFDAEPVLARDDDAKAGKKKDDADKP
PPMTVNASAKAMWMSEKGALTNATVSMTRDALEWQHIHVKGGLGSGKSFTANVQPGAAKT
RSFSVASDDAGGVMRVFDIYGDLMGGDLSVEGHIDDSRKEQPYDGIIKVSDYHVRNAPVL
ARLLTVAALAGILDVLQGEGVSFSSLEAPFTMTDGLVEVRDVRAWGPALGITAKGQIDLD
KSRMAMEGTVVPAYALNSVLGKIPVLGWLITGGEKGGGIIAFNYSMKGPTDDPSVTVNPL
SALTPGFLRNLFNIFDDGSETSARKPAAKDPK