Protein Info for AMB_RS13385 in Magnetospirillum magneticum AMB-1

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 621 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details PF00672: HAMP" amino acids 208 to 256 (49 residues), 35.1 bits, see alignment 1.3e-12 PF00015: MCPsignal" amino acids 373 to 521 (149 residues), 114 bits, see alignment E=7.1e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2660)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W3W1 at UniProt or InterPro

Protein Sequence (621 amino acids)

>AMB_RS13385 methyl-accepting chemotaxis protein (Magnetospirillum magneticum AMB-1)
MLARVADARITVKFFIAPLLLVACIMVLGAVFHVAMERQEQSMEGMVTVSFANSRTAAEL
DGMAATIESNIYRLLGWQAAKEEKDRIRALDTQVRADLKTLGEKSKALLDSLKAEPATSK
QIRDYILAAGDVLDMYQSDHVTALAMMGATELEYDGIRAKLREMTTKAAASAAEDYHEAK
ASADSTRTQYFLVLAIFLALGVVVTLGMARLTARPVTQLTGIMGRLAEGSTDVEIPSQDG
RDEVGEMARAVAVFRDGMKRAADLESQQRRQREQQTELLARRDRMIAEFNGAMEKIMATV
SSSIERVHTLSSSLQSTAEQTSAQGSAVAGAAEHSAANVATVASAAEQLGSSVQEISRRV
TETATITSEAVSGIHTANTTMDGLAEAARRIGEVVQLINDIAGQTNLLALNATIEAARAG
EAGKGFAVVASEVKTLANQTARATDEIAQQIAGIQSISQEAVQTIRNVGTTIDRVNEVVS
SIAAAVEEQSAATDEIVRSVQEASSGNAEITRNIADVSKAATATGEMASGMFKAADELVE
EAGHLRSEVSGFLGNMRQRIRHEKSRTRHHRPRSGSHHADLIPSCGDRNRSPQRPHAAGG
RRAPLPPARKARGPLGLTNPR