Protein Info for AMB_RS13020 in Magnetospirillum magneticum AMB-1

Annotation: KR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00106: adh_short" amino acids 11 to 194 (184 residues), 183.7 bits, see alignment E=4.3e-58 PF08659: KR" amino acids 13 to 160 (148 residues), 41.3 bits, see alignment E=2.4e-14 PF13561: adh_short_C2" amino acids 19 to 253 (235 residues), 182.9 bits, see alignment E=1.2e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2587)

Predicted SEED Role

"D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)" in subsystem Polyhydroxybutyrate metabolism (EC 1.1.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.30

Use Curated BLAST to search for 1.1.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W434 at UniProt or InterPro

Protein Sequence (256 amino acids)

>AMB_RS13020 KR domain-containing protein (Magnetospirillum magneticum AMB-1)
MGDPWPLAGRHALVTGGGRGIGAAIARQMLALGAVVTITGRDQGRLDAAATSLGCSAVAM
DVTDAPAIQNGFARAAQVQGPITILVNNAGIAKAAPFAKTDLGLWDDILRTDLTGAFLCT
QAALPGMLEAGWGRVVNVASTAGLTGLAYCAAYCAAKHGLIGLTRALAVELASKPVTVNA
VCPGYTETDIVADTIANIVAKTGRTPEEALAGLVAANPQKRLIKPEEVAEAVAWLCLPGS
ASITGQSIAVAGGELM