Protein Info for AMB_RS13000 in Magnetospirillum magneticum AMB-1

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 56 (21 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 107 to 136 (30 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 228 to 254 (27 residues), see Phobius details amino acids 258 to 274 (17 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 334 to 361 (28 residues), see Phobius details amino acids 373 to 396 (24 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF06808: DctM" amino acids 15 to 449 (435 residues), 327.8 bits, see alignment E=5e-102 TIGR00786: TRAP transporter, DctM subunit" amino acids 24 to 451 (428 residues), 314.7 bits, see alignment E=4.1e-98

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2583)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W438 at UniProt or InterPro

Protein Sequence (486 amino acids)

>AMB_RS13000 C4-dicarboxylate ABC transporter (Magnetospirillum magneticum AMB-1)
MTQFLIANMAPLMFAALVFFLLIGYPVAFALAANGIVFGLVGIELGLLNASLFQALPERI
FGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPIRGGLAYAVIFVGALLAAT
TGVVAASVISMGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSLVLIIMADQLGRSV
GDMYAGAFIPGFVLTGLYAGFIFLVTMIRPSFAPALPPEARSLRGMGLLLRTVTCLVPPL
ILIFLVLGTIFIGVATPTEGGAMGAAGAMILALMKRKLDWNLMRQAMDTTAKLSCFVVFI
LVGSTVFGLVFRGVNGDLWVEHLMSSLPGGKLGFLIVTNVLMFVLAFFLDFFELAFILVP
LLGPVAEKMGIDLIWFGVLLGVNMQTSFMHPPFGFALFYLRSVAPKTDYIDKITNKLTPK
ITTGQIYWGAVPFVIIQIIMVGLVIAFPDLVTGGIDKAAAVDTSKIQIEVPQGEFGGGMY
GGPDSK