Protein Info for AMB_RS12910 in Magnetospirillum magneticum AMB-1

Annotation: formylglycine-generating enzyme family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03781: FGE-sulfatase" amino acids 38 to 260 (223 residues), 155.1 bits, see alignment E=1.4e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2565)

Predicted SEED Role

"Nitrite reductase accessory protein NirV" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W456 at UniProt or InterPro

Protein Sequence (263 amino acids)

>AMB_RS12910 formylglycine-generating enzyme family protein (Magnetospirillum magneticum AMB-1)
MTMRFFHVLLATLAVTVPLVARADSPAAGKVFKDCAFCPELVVIPTGSVIAGNPKDYDDP
EPDAPKRPTVTIAKPYAIGKYEVTQAEWEAVMGSNPSENKGPSNPVEHVDWRMVQDYIAK
LNAKSGQTYRLPTEAEWEYAARAGSAATYSYGEDEKKLGEYAWFAANSGNVTHPVGKLKP
NAFGLYDMHGNVWEWTADCYMEKFIAGLKDQKFSKDWETGCYRVTRGGSALNLPMAVTSW
YRASLKQPLHNANLGFRLAKTLP