Protein Info for AMB_RS12790 in Magnetospirillum magneticum AMB-1

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF00005: ABC_tran" amino acids 27 to 178 (152 residues), 110.3 bits, see alignment E=1.2e-35

Best Hits

Swiss-Prot: 44% identical to LOLD_NOVAD: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)

KEGG orthology group: K02003, (no description) (inferred from 100% identity to mag:amb2540)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W481 at UniProt or InterPro

Protein Sequence (232 amino acids)

>AMB_RS12790 ABC transporter ATP-binding protein (Magnetospirillum magneticum AMB-1)
MTGPQVLAELTGIAKHFGEGASRVDALRGVDLSLHPGEVVGLLGPSGSGKSTLLNIIGCV
VEPNAGRMVLDGVVVYDGAWTGGDLRRLRLDKIGFIFQFHNLLPFLNSRDNVAVVLELAG
QDPAAARRRAGELLDYLEVGARAEASPGQLSGGEAQRVAIARALANNPRLILADEPTAAL
DSQRAAIVMDLLIKVAREQNAAVLVVSHDEKIYDRFDRMVRVRDGVLESGSA