Protein Info for AMB_RS12515 in Magnetospirillum magneticum AMB-1

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 755 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07244: POTRA" amino acids 27 to 92 (66 residues), 31.2 bits, see alignment E=4.5e-11 amino acids 94 to 171 (78 residues), 62.2 bits, see alignment E=9.5e-21 amino acids 175 to 262 (88 residues), 59.6 bits, see alignment E=6.1e-20 amino acids 278 to 344 (67 residues), 48.9 bits, see alignment E=1.3e-16 amino acids 349 to 421 (73 residues), 45.9 bits, see alignment E=1.2e-15 TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 28 to 755 (728 residues), 796.7 bits, see alignment E=1.2e-243 PF01103: Omp85" amino acids 448 to 755 (308 residues), 216.4 bits, see alignment E=1.1e-67

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 100% identity to mag:amb2490)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W4D1 at UniProt or InterPro

Protein Sequence (755 amino acids)

>AMB_RS12515 outer membrane protein assembly factor BamA (Magnetospirillum magneticum AMB-1)
MRFVLWTAVLLGILVGVMPASAQEGGRIRSISILGTQRIEVETVKSYMTVAEGDLYDTDR
VNRSLKALFNTGLFQDVAIRREGDQLLVRVVENPIINRIAYEGNNRIKEEQLNTEVQLRP
RTVYTRSKVQADVKRILELYRRSGRFAATVEPKIIQLEQNRVDLVYEISEGQPTYVRRIA
FVGNKRYDQDKLREVLQTKEERWYRFLTTDDTYDPDRVTYDRELLRRYYLKQGFADFRVS
SAIAELTPSREGFFITYTIDEGERYKFGSSVINAELRDLKPEDLQPLLISETGGWYNADQ
VEDIVQRLTDAVGTKGYAFVDVKPQVQRNRETHTIDITYEIKEGPRVFVERIDISGNVRT
LDQVIRREFRLVEGDAFNSAKLRRSRQRLKDLNFFEKAEVTNIPSDTAPDRTIIKVDVQE
KSTGELMFGVGWASSAGPIIEASLRERNLLGRGQDLRLGAGLGTKRSSLDLSFTEPYFMD
REVAAGFDAFVIDRKLQKESSYDASSIGGDLRAGYRLSESLRQDVIYTLKQDTVKGISST
SPYVLEQIGSKVSSVIGQSLMYDRRDSRLDPTEGYFIKLGTDGAGLGGDIRYLRGTLTGG
QYFTLTDKVILGVSSSVGYIYGLDQRVRITDRFFVGGDNLRGFANGGVSPRDKNTGDALG
GIWQAVGSAQVKFPLGLPEEFGVSGQAFTDIGAVGETDTADTAAVQQSSSVRVSPGVGIS
WKSPMGPVSVDLGYPLVKEKFDKKEFFRFNFGTKF