Protein Info for AMB_RS11995 in Magnetospirillum magneticum AMB-1

Annotation: ABC protease/lipase transporter ATPase/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 598 transmembrane" amino acids 45 to 67 (23 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 155 to 177 (23 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 273 to 292 (20 residues), see Phobius details PF00664: ABC_membrane" amino acids 50 to 309 (260 residues), 102 bits, see alignment E=4.8e-33 PF00005: ABC_tran" amino acids 377 to 523 (147 residues), 90.9 bits, see alignment E=1.2e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2376)

Predicted SEED Role

"ABC transporter HlyB/MsbA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W4P5 at UniProt or InterPro

Protein Sequence (598 amino acids)

>AMB_RS11995 ABC protease/lipase transporter ATPase/permease (Magnetospirillum magneticum AMB-1)
MLVFEGARRAARGAYAMSDPAAGQQSAADAPAFSIASLSTLKSNLFDLAMASLFLNILGL
ALPMALLQVYDRILPNKSVGTMVFLMGAVLGALLLESTLNFCRSWITGWVGAKFEHNAGC
TALNHLVMAGVDEFEKDGSGAHLERMNSLATVREFYAGQAMLTLLDLPFAILYLSLVAMM
GGILVFVPITILVLFCVTAIILGGKLRGALQKRMIADDRRFNFIIEVLGGIHSVKAFAME
AQMVRRYERLQETCAEGAYQVALNSSTAMGVSSFFSQATTVCVAMFGALVVLNGEMTTGG
LAACSMLAGRAMAPIQKALGVWTRFQSFMLARHRLSELFKLKPESAKGLPKMTSPKGALE
LKDCTFRYGEKLPVIIQHASIDIREGECIAISGGNGSGKTTLLTLMQGAIKPTTGEVLVD
GQPMTMFEPQSVRDHIAFLPQMGVLFQGTILQNITMFRKEFDDVAVETAALLGLDEVVAT
MALGYDTPVGDGAYDSLPRGIKQRIAIARALVNNPRVVLFDEANTAVDTTGDNFLRVWLE
RAKGKRTLVLVTPRPSLVKLADRVFDLKDGTLIAKAPREERPMTPDMPAGLLPQGGPA